add r-reactomegsa

2 files changed, 77 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..f22ed5219453
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,30 @@
+pkgbase = r-reactomegsa
+	pkgdesc = Client for the Reactome Analysis Service for comparative multi-omics gene set analysis
+	pkgver = 1.10.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/ReactomeGSA
+	arch = any
+	license = MIT
+	depends = r
+	depends = r-dplyr
+	depends = r-ggplot2
+	depends = r-gplots
+	depends = r-httr
+	depends = r-jsonlite
+	depends = r-progress
+	depends = r-rcolorbrewer
+	depends = r-tidyr
+	optdepends = r-biobase
+	optdepends = r-devtools
+	optdepends = r-edger
+	optdepends = r-knitr
+	optdepends = r-limma
+	optdepends = r-reactomegsa.data
+	optdepends = r-rmarkdown
+	optdepends = r-scater
+	optdepends = r-seurat
+	optdepends = r-testthat
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/ReactomeGSA_1.10.0.tar.gz
+	sha256sums = 38ea455176b247fc4c6a13fe066a4b4cb1a24ddf1fc57ddae17e30ddf34e86aa
+
+pkgname = r-reactomegsa
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..3fa79f8930f7
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,47 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=ReactomeGSA
+_pkgver=1.10.0
+pkgname=r-${_pkgname,,}
+pkgver=1.10.0
+pkgrel=1
+pkgdesc='Client for the Reactome Analysis Service for comparative multi-omics gene set analysis'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('MIT')
+depends=(
+  r
+  r-dplyr
+  r-ggplot2
+  r-gplots
+  r-httr
+  r-jsonlite
+  r-progress
+  r-rcolorbrewer
+  r-tidyr
+)
+optdepends=(
+  r-biobase
+  r-devtools
+  r-edger
+  r-knitr
+  r-limma
+  r-reactomegsa.data
+  r-rmarkdown
+  r-scater
+  r-seurat
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('38ea455176b247fc4c6a13fe066a4b4cb1a24ddf1fc57ddae17e30ddf34e86aa')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+  install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
+}
+# vim:set ts=2 sw=2 et: