add r-recountmethylation

2 files changed, 76 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..65e8917d5db1
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,30 @@
+pkgbase = r-recountmethylation
+	pkgdesc = Access and analyze DNA methylation database compilations
+	pkgver = 1.6.1
+	pkgrel = 1
+	url = https://bioconductor.org/packages/recountmethylation
+	arch = any
+	license = Artistic2.0
+	depends = r
+	depends = r-biocfilecache
+	depends = r-hdf5array
+	depends = r-minfi
+	depends = r-r.utils
+	depends = r-rcurl
+	depends = r-rhdf5
+	depends = r-s4vectors
+	depends = r-illuminahumanmethylation450kmanifest
+	optdepends = r-annotationhub
+	optdepends = r-biocstyle
+	optdepends = r-experimenthub
+	optdepends = r-genomicranges
+	optdepends = r-ggplot2
+	optdepends = r-gridextra
+	optdepends = r-knitr
+	optdepends = r-limma
+	optdepends = r-rmarkdown
+	optdepends = r-testthat
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/recountmethylation_1.6.1.tar.gz
+	sha256sums = b1944639f86647d9bce9842b5a06a3e9d3696e21f02c2fc3d7b26d806d15a8cc
+
+pkgname = r-recountmethylation
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..ecc8aaf5e9b6
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,46 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=recountmethylation
+_pkgver=1.6.1
+pkgname=r-${_pkgname,,}
+pkgver=1.6.1
+pkgrel=1
+pkgdesc='Access and analyze DNA methylation database compilations'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('Artistic2.0')
+depends=(
+  r
+  r-biocfilecache
+  r-hdf5array
+  r-minfi
+  r-r.utils
+  r-rcurl
+  r-rhdf5
+  r-s4vectors
+  r-illuminahumanmethylation450kmanifest
+)
+optdepends=(
+  r-annotationhub
+  r-biocstyle
+  r-experimenthub
+  r-genomicranges
+  r-ggplot2
+  r-gridextra
+  r-knitr
+  r-limma
+  r-rmarkdown
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('b1944639f86647d9bce9842b5a06a3e9d3696e21f02c2fc3d7b26d806d15a8cc')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: