Version 1.0.1

2 files changed, 93 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..e4c8eb293188
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,35 @@
+pkgbase = r-regionalst
+	pkgdesc = Investigating regions of interest and performing cross-regional analysis with spatial transcriptomics data
+	pkgver = 1.0.1
+	pkgrel = 1
+	url = https://bioconductor.org/packages/RegionalST
+	arch = any
+	license = GPL-3.0-only
+	checkdepends = r-testthat
+	depends = r-assertthat
+	depends = r-bayesspace
+	depends = r-colorspace
+	depends = r-dplyr
+	depends = r-fgsea
+	depends = r-ggplot2
+	depends = r-gridextra
+	depends = r-magrittr
+	depends = r-rcolorbrewer
+	depends = r-s4vectors
+	depends = r-scater
+	depends = r-seurat
+	depends = r-shiny
+	depends = r-singlecellexperiment
+	depends = r-summarizedexperiment
+	depends = r-tibble
+	depends = r-toast
+	optdepends = r-biocstyle
+	optdepends = r-gplots
+	optdepends = r-knitr
+	optdepends = r-rmarkdown
+	optdepends = r-testthat
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/RegionalST_1.0.1.tar.gz
+	md5sums = d9589bef7f1408c77dee510baa14b4ad
+	b2sums = 82d2fe4733e6bbfc397e0f52e30b13dafd96c5305ac67b8461ceb9edb86c3671d7924b05b441665a1b86c864ae8def6d0687773984f60731a0049132e3257749
+
+pkgname = r-regionalst
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..c3b389beda61
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,58 @@
+# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
+
+_pkgname=RegionalST
+_pkgver=1.0.1
+pkgname=r-${_pkgname,,}
+pkgver=${_pkgver//-/.}
+pkgrel=1
+pkgdesc="Investigating regions of interest and performing cross-regional analysis with spatial transcriptomics data"
+arch=(any)
+url="https://bioconductor.org/packages/$_pkgname"
+license=('GPL-3.0-only')
+depends=(
+  r-assertthat
+  r-bayesspace
+  r-colorspace
+  r-dplyr
+  r-fgsea
+  r-ggplot2
+  r-gridextra
+  r-magrittr
+  r-rcolorbrewer
+  r-s4vectors
+  r-scater
+  r-seurat
+  r-shiny
+  r-singlecellexperiment
+  r-summarizedexperiment
+  r-tibble
+  r-toast
+)
+checkdepends=(
+  r-testthat
+)
+optdepends=(
+  r-biocstyle
+  r-gplots
+  r-knitr
+  r-rmarkdown
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+md5sums=('d9589bef7f1408c77dee510baa14b4ad')
+b2sums=('82d2fe4733e6bbfc397e0f52e30b13dafd96c5305ac67b8461ceb9edb86c3671d7924b05b441665a1b86c864ae8def6d0687773984f60731a0049132e3257749')
+
+build() {
+  mkdir build
+  R CMD INSTALL -l build "$_pkgname"
+}
+
+check() {
+  cd "$_pkgname/tests"
+  R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
+}
+
+package() {
+  install -d "$pkgdir/usr/lib/R/library"
+  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
+}