add r-regionreport

2 files changed, 100 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..85e750b39882
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,42 @@
+pkgbase = r-regionreport
+	pkgdesc = Generate HTML or PDF reports for a set of genomic regions or DESeq2/edgeR results
+	pkgver = 1.30.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/regionReport
+	arch = any
+	license = Artistic2.0
+	depends = r
+	depends = r-biocstyle
+	depends = r-deformats
+	depends = r-derfinder
+	depends = r-deseq2
+	depends = r-genomeinfodb
+	depends = r-genomicranges
+	depends = r-knitr
+	depends = r-knitrbootstrap
+	depends = r-refmanager
+	depends = r-rmarkdown
+	depends = r-s4vectors
+	depends = r-summarizedexperiment
+	optdepends = r-biocmanager
+	optdepends = r-biovizbase
+	optdepends = r-bumphunter
+	optdepends = r-derfinderplot
+	optdepends = r-dt
+	optdepends = r-edger
+	optdepends = r-ggbio
+	optdepends = r-ggplot2
+	optdepends = r-grid
+	optdepends = r-gridextra
+	optdepends = r-iranges
+	optdepends = r-mgcv
+	optdepends = r-pasilla
+	optdepends = r-pheatmap
+	optdepends = r-rcolorbrewer
+	optdepends = r-sessioninfo
+	optdepends = r-txdb.hsapiens.ucsc.hg19.knowngene
+	optdepends = r-whisker
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/regionReport_1.30.0.tar.gz
+	sha256sums = 0970d4612e989f9348afe6e8c404367f5090efd7c616d2f57347d6dd8b8911e3
+
+pkgname = r-regionreport
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..1d66117cebaa
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,58 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=regionReport
+_pkgver=1.30.0
+pkgname=r-${_pkgname,,}
+pkgver=1.30.0
+pkgrel=1
+pkgdesc='Generate HTML or PDF reports for a set of genomic regions or DESeq2/edgeR results'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('Artistic2.0')
+depends=(
+  r
+  r-biocstyle
+  r-deformats
+  r-derfinder
+  r-deseq2
+  r-genomeinfodb
+  r-genomicranges
+  r-knitr
+  r-knitrbootstrap
+  r-refmanager
+  r-rmarkdown
+  r-s4vectors
+  r-summarizedexperiment
+)
+optdepends=(
+  r-biocmanager
+  r-biovizbase
+  r-bumphunter
+  r-derfinderplot
+  r-dt
+  r-edger
+  r-ggbio
+  r-ggplot2
+  r-grid
+  r-gridextra
+  r-iranges
+  r-mgcv
+  r-pasilla
+  r-pheatmap
+  r-rcolorbrewer
+  r-sessioninfo
+  r-txdb.hsapiens.ucsc.hg19.knowngene
+  r-whisker
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('0970d4612e989f9348afe6e8c404367f5090efd7c616d2f57347d6dd8b8911e3')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: