upgpkg: r-rhtslib 2.0.0-1

upstream release

2 files changed, 32 insertions, 25 deletions

diff --git a/.SRCINFO b/.SRCINFO
index 86aed46c028b..3280c13af5e4 100644
--- a/.SRCINFO
+++ b/.SRCINFO
@@ -1,23 +1,19 @@
 pkgbase = r-rhtslib
 	pkgdesc = HTSlib high-throughput sequencing library as an R package
-	pkgver = 1.28.0
+	pkgver = 2.0.0
 	pkgrel = 1
 	url = https://bioconductor.org/packages/release/bioc/html/Rhtslib.html
 	arch = i686
 	arch = x86_64
-	license = LGPL2
-	makedepends = make
+	license = LGPL2.1
 	depends = r
 	depends = r-zlibbioc
-	depends = bzip2
-	depends = xz
-	depends = curl
 	optdepends = r-knitr
-	optdepends = r-rmarkdown
+	optdepends = r-markdown
 	optdepends = r-biocstyle
 	options = !lto
 	options = staticlibs
-	source = https://bioconductor.org/packages/release/bioc/src/contrib/Rhtslib_1.28.0.tar.gz
-	sha256sums = 4e48c8643e5d3429238ee76faa4c68ed8a7028e7f594c109ee75f5e994d17c1e
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/Rhtslib_2.0.0.tar.gz
+	b2sums = a12733e6d900552b20e8ac9e6bb95d63146ab35dc41bf5e31357795891882333689ca4b8ad94e1007a7c5893c3757c4fb41f0384815c9964d9826b0e2a013bb7
 
 pkgname = r-rhtslib
diff --git a/PKGBUILD b/PKGBUILD
index 41160eec8bfa..717541d6178c 100644
--- a/PKGBUILD
+++ b/PKGBUILD
@@ -2,31 +2,42 @@
 # Contributor: Viktor Drobot (aka dviktor) linux776 [at] gmail [dot] com
 # Contributor: Grey Christoforo <first name at last name dot net>
 
+
 _bcname=Rhtslib
-_bcver=1.28.0
+_bcver=2.0.0
 pkgname=r-${_bcname,,}
-pkgver=${_bcver//[:-]/.}
-pkgrel=1
 pkgdesc="HTSlib high-throughput sequencing library as an R package"
-arch=(i686 x86_64)
 url="https://bioconductor.org/packages/release/bioc/html/${_bcname}.html"
-license=(LGPL2)
-depends=(r r-zlibbioc bzip2 xz curl)
-makedepends=(make)
-optdepends=(r-knitr r-rmarkdown r-biocstyle)
+license=("LGPL2.1")
+pkgver=${_bcver//[:-]/.}
+pkgrel=1
+
+arch=("i686" "x86_64")
+depends=(
+    "r"
+    "r-zlibbioc"
+)
+optdepends=(
+    "r-knitr"
+    "r-markdown"
+    "r-biocstyle"
+)
+makedepends=()
+
 source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_bcname}_${_bcver}.tar.gz")
-sha256sums=('4e48c8643e5d3429238ee76faa4c68ed8a7028e7f594c109ee75f5e994d17c1e')
-options=(!lto staticlibs)
+b2sums=('a12733e6d900552b20e8ac9e6bb95d63146ab35dc41bf5e31357795891882333689ca4b8ad94e1007a7c5893c3757c4fb41f0384815c9964d9826b0e2a013bb7')
+
+options=("!lto" "staticlibs")
 
 build() {
-  R CMD INSTALL ${_bcname}_${_bcver}.tar.gz -l "${srcdir}"
+    R CMD INSTALL ${_bcname}_${_bcver}.tar.gz -l "${srcdir}"
 }
 
 package() {
-  install -dm0755 "${pkgdir}/usr/lib/R/library"
-  cp -a --no-preserve=ownership "${_bcname}" "${pkgdir}/usr/lib/R/library"
+    install -dm0755 "${pkgdir}/usr/lib/R/library"
+    cp -a --no-preserve=ownership "${_bcname}" "${pkgdir}/usr/lib/R/library"
 
-  if [[ -f "${_cranname}/LICENSE" ]]; then
-    install -Dm0644 "${_cranname}/LICENSE" "${pkgdir}/usr/share/licenses/${pkgname}/LICENSE"
-  fi
+    if [[ -f "${_bcname}/LICENSE" ]]; then
+        install -Dm0644 "${_bcname}/LICENSE" "${pkgdir}/usr/share/licenses/${pkgname}/LICENSE"
+    fi
 }