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authorChristoph Fink2022-04-29 14:42:36 +0300
committerChristoph Fink2022-04-29 14:42:36 +0300
commitbb52d2d05697eea0f31be8b9e8233bb8796dc6c8 (patch)
tree0141a9f8ee10b3bae4cae90d13fd06d9c93f03d7
parentf6b86a3249edcf862daedb7b302751b3f6013bf7 (diff)
downloadaur-bb52d2d05697eea0f31be8b9e8233bb8796dc6c8.tar.gz
upgpkg: r-rhtslib 1.28.0-1
upstream release upstream release
-rw-r--r--.SRCINFO6
-rw-r--r--PKGBUILD10
2 files changed, 10 insertions, 6 deletions
diff --git a/.SRCINFO b/.SRCINFO
index 46556642b1e0..3b3a8e5bebf3 100644
--- a/.SRCINFO
+++ b/.SRCINFO
@@ -1,6 +1,6 @@
pkgbase = r-rhtslib
pkgdesc = HTSlib high-throughput sequencing library as an R package
- pkgver = 1.26.0
+ pkgver = 1.28.0
pkgrel = 1
url = https://bioconductor.org/packages/release/bioc/html/Rhtslib.html
arch = i686
@@ -16,7 +16,7 @@ pkgbase = r-rhtslib
optdepends = r-rmarkdown
optdepends = r-biocstyle
options = staticlibs
- source = https://bioconductor.org/packages/release/bioc/src/contrib/Rhtslib_1.26.0.tar.gz
- sha256sums = 24bba61616e7d4fc57fda86172486b92ffcae31d1a7183d7b8ee29e324ff955f
+ source = https://bioconductor.org/packages/release/bioc/src/contrib/Rhtslib_1.28.0.tar.gz
+ sha256sums = 4e48c8643e5d3429238ee76faa4c68ed8a7028e7f594c109ee75f5e994d17c1e
pkgname = r-rhtslib
diff --git a/PKGBUILD b/PKGBUILD
index 53120c8d64ef..336f45ac758c 100644
--- a/PKGBUILD
+++ b/PKGBUILD
@@ -1,8 +1,9 @@
+# Maintainer: peippo <christoph+aur@christophfink.com>
# Contributor: Viktor Drobot (aka dviktor) linux776 [at] gmail [dot] com
# Contributor: Grey Christoforo <first name at last name dot net>
_bcname=Rhtslib
-_bcver=1.26.0
+_bcver=1.28.0
pkgname=r-${_bcname,,}
pkgver=${_bcver//[:-]/.}
pkgrel=1
@@ -14,7 +15,7 @@ depends=(r r-zlibbioc bzip2 xz curl)
makedepends=(make)
optdepends=(r-knitr r-rmarkdown r-biocstyle)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_bcname}_${_bcver}.tar.gz")
-sha256sums=('24bba61616e7d4fc57fda86172486b92ffcae31d1a7183d7b8ee29e324ff955f')
+sha256sums=('4e48c8643e5d3429238ee76faa4c68ed8a7028e7f594c109ee75f5e994d17c1e')
options=(staticlibs)
build() {
@@ -23,6 +24,9 @@ build() {
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
-
cp -a --no-preserve=ownership "${_bcname}" "${pkgdir}/usr/lib/R/library"
+
+ if [[ -f "${_cranname}/LICENSE" ]]; then
+ install -Dm0644 "${_cranname}/LICENSE" "${pkgdir}/usr/share/licenses/${pkgname}/LICENSE"
+ fi
}