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| author | Sukanka | 2022-06-06 20:53:24 +0800 |
|---|---|---|
| committer | Sukanka | 2022-06-06 20:53:24 +0800 |
| commit | d33a628e7f9975e13deca10e5715ea26e46c8097 (patch) | |
| tree | 904f5a6478bfaf06bd71f80373c4f286622af069 | |
| download | aur-d33a628e7f9975e13deca10e5715ea26e46c8097.tar.gz | |
add r-rjmcmcnucleosomes
| -rw-r--r-- | .SRCINFO | 26 | ||||
| -rw-r--r-- | PKGBUILD | 43 |
2 files changed, 69 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO new file mode 100644 index 000000000000..3ac3e4d79142 --- /dev/null +++ b/.SRCINFO @@ -0,0 +1,26 @@ +pkgbase = r-rjmcmcnucleosomes + pkgdesc = Bayesian hierarchical model for genome-wide nucleosome positioning with high-throughput short-read data (MNase-Seq) + pkgver = 1.20.0 + pkgrel = 1 + url = https://bioconductor.org/packages/RJMCMCNucleosomes + arch = x86_64 + license = Artistic2.0 + depends = r + depends = r-biocgenerics + depends = r-biocparallel + depends = r-consensusseeker + depends = r-genomeinfodb + depends = r-genomicranges + depends = r-iranges + depends = r-rcpp + depends = r-s4vectors + depends = gsl + optdepends = r-biocstyle + optdepends = r-knitr + optdepends = r-nucleosim + optdepends = r-rmarkdown + optdepends = r-runit + source = https://bioconductor.org/packages/release/bioc/src/contrib/RJMCMCNucleosomes_1.20.0.tar.gz + sha256sums = d10545eb88718f21c716e2b6959a201f9d61b8d64e97aecc5ce2b2e8e9d61955 + +pkgname = r-rjmcmcnucleosomes diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..57dd3596a8d9 --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,43 @@ +# system requirements: Rcpp +# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> + +_pkgname=RJMCMCNucleosomes +_pkgver=1.20.0 +pkgname=r-${_pkgname,,} +pkgver=1.20.0 +pkgrel=1 +pkgdesc='Bayesian hierarchical model for genome-wide nucleosome positioning with high-throughput short-read data (MNase-Seq)' +arch=('x86_64') +url="https://bioconductor.org/packages/${_pkgname}" +license=('Artistic2.0') +depends=( + r + r-biocgenerics + r-biocparallel + r-consensusseeker + r-genomeinfodb + r-genomicranges + r-iranges + r-rcpp + r-s4vectors + gsl +) +optdepends=( + r-biocstyle + r-knitr + r-nucleosim + r-rmarkdown + r-runit +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +sha256sums=('d10545eb88718f21c716e2b6959a201f9d61b8d64e97aecc5ce2b2e8e9d61955') + +build() { + R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" +} + +package() { + install -dm0755 "${pkgdir}/usr/lib/R/library" + cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" +} +# vim:set ts=2 sw=2 et: |