diff options
| author | Sukanka | 2022-06-06 21:03:39 +0800 |
|---|---|---|
| committer | Sukanka | 2022-06-06 21:03:39 +0800 |
| commit | 6d579c41706fc68334cb4336c8bce751236f33ac (patch) | |
| tree | 7a41a38366b746258c68513bd0e003ae079841c6 | |
| download | aur-6d579c41706fc68334cb4336c8bce751236f33ac.tar.gz | |
add r-rmmquant
| -rw-r--r-- | .SRCINFO | 25 | ||||
| -rw-r--r-- | PKGBUILD | 42 |
2 files changed, 67 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO new file mode 100644 index 000000000000..84b3f69e3d0d --- /dev/null +++ b/.SRCINFO @@ -0,0 +1,25 @@ +pkgbase = r-rmmquant + pkgdesc = RNA-Seq multi-mapping Reads Quantification Tool + pkgver = 1.14.0 + pkgrel = 1 + url = https://bioconductor.org/packages/Rmmquant + arch = x86_64 + license = GPL + depends = r + depends = r-biocstyle + depends = r-deseq2 + depends = r-devtools + depends = r-genomicranges + depends = r-org.mm.eg.db + depends = r-rcpp + depends = r-s4vectors + depends = r-summarizedexperiment + depends = r-tbx20bamsubset + depends = r-txdb.mmusculus.ucsc.mm9.knowngene + optdepends = r-knitr + optdepends = r-rmarkdown + optdepends = r-testthat + source = https://bioconductor.org/packages/release/bioc/src/contrib/Rmmquant_1.14.0.tar.gz + sha256sums = d3dd4c976e62ac0722ab47c581c6f43154e5114afe6506ab5540b0499c585ae8 + +pkgname = r-rmmquant diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..84fc85bab1b4 --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,42 @@ +# system requirements: C++11 +# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> + +_pkgname=Rmmquant +_pkgver=1.14.0 +pkgname=r-${_pkgname,,} +pkgver=1.14.0 +pkgrel=1 +pkgdesc='RNA-Seq multi-mapping Reads Quantification Tool' +arch=('x86_64') +url="https://bioconductor.org/packages/${_pkgname}" +license=('GPL') +depends=( + r + r-biocstyle + r-deseq2 + r-devtools + r-genomicranges + r-org.mm.eg.db + r-rcpp + r-s4vectors + r-summarizedexperiment + r-tbx20bamsubset + r-txdb.mmusculus.ucsc.mm9.knowngene +) +optdepends=( + r-knitr + r-rmarkdown + r-testthat +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +sha256sums=('d3dd4c976e62ac0722ab47c581c6f43154e5114afe6506ab5540b0499c585ae8') + +build() { + R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" +} + +package() { + install -dm0755 "${pkgdir}/usr/lib/R/library" + cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" +} +# vim:set ts=2 sw=2 et: |