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| author | BioArchLinuxBot | 2024-02-08 12:38:51 +0000 |
|---|---|---|
| committer | BioArchLinuxBot | 2024-02-08 12:38:51 +0000 |
| commit | 59e0e7d21c599d146fea514a458c4c215c0cd373 (patch) | |
| tree | 98b6705eed0a4192b7ec70e28730d6472a12ed43 | |
| parent | 1c2275faa3169d69d1e77a5c7f219fcf64773b94 (diff) | |
| download | aur-59e0e7d21c599d146fea514a458c4c215c0cd373.tar.gz | |
[lilac] updated to 2.32.5-3
| -rw-r--r-- | .SRCINFO | 6 | ||||
| -rw-r--r-- | PKGBUILD | 17 | ||||
| -rw-r--r-- | fix-plugin.patch | 17 |
3 files changed, 35 insertions, 5 deletions
@@ -1,13 +1,14 @@ pkgbase = r-rstan pkgdesc = R Interface to Stan pkgver = 2.32.5 - pkgrel = 2 + pkgrel = 3 url = https://cran.r-project.org/package=rstan arch = x86_64 license = GPL-3.0-or-later checkdepends = r-testthat makedepends = r-bh makedepends = r-rcppeigen + depends = onetbb depends = pandoc depends = r-ggplot2 depends = r-gridextra @@ -28,7 +29,10 @@ pkgbase = r-rstan optdepends = r-testthat optdepends = r-v8 source = https://cran.r-project.org/src/contrib/rstan_2.32.5.tar.gz + source = fix-plugin.patch md5sums = 0d7ea5114187f589f6a2255cf1eeb397 + md5sums = 4bd2cd1d41029fb5d9b792b56d9cd524 b2sums = 509272c2b88ad2d1949620fc5ad7a32ab894005a829226ec9ccf39af0cd7bbbcfc4faee798f75ba4f4a984a827bae491cbdc52b7ea1c9292054382dae02bc3d9 + b2sums = b5cb53f8d2e3cc84ebbed12e8439f59f5b1b62b747a3e6f9212750b882ee2833319af69cd973734670fba7bdbd924bc5a2d63733c60ddf437623bc83d3f3e4a7 pkgname = r-rstan @@ -9,12 +9,13 @@ _pkgname=rstan _pkgver=2.32.5 pkgname=r-${_pkgname,,} pkgver=${_pkgver//-/.} -pkgrel=2 +pkgrel=3 pkgdesc="R Interface to Stan" arch=(x86_64) url="https://cran.r-project.org/package=$_pkgname" license=('GPL-3.0-or-later') depends=( + onetbb pandoc r-ggplot2 r-gridextra @@ -44,9 +45,17 @@ optdepends=( r-testthat r-v8 ) -source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz") -md5sums=('0d7ea5114187f589f6a2255cf1eeb397') -b2sums=('509272c2b88ad2d1949620fc5ad7a32ab894005a829226ec9ccf39af0cd7bbbcfc4faee798f75ba4f4a984a827bae491cbdc52b7ea1c9292054382dae02bc3d9') +source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz" + "fix-plugin.patch") +md5sums=('0d7ea5114187f589f6a2255cf1eeb397' + '4bd2cd1d41029fb5d9b792b56d9cd524') +b2sums=('509272c2b88ad2d1949620fc5ad7a32ab894005a829226ec9ccf39af0cd7bbbcfc4faee798f75ba4f4a984a827bae491cbdc52b7ea1c9292054382dae02bc3d9' + 'b5cb53f8d2e3cc84ebbed12e8439f59f5b1b62b747a3e6f9212750b882ee2833319af69cd973734670fba7bdbd924bc5a2d63733c60ddf437623bc83d3f3e4a7') + +prepare() { + # fix Rcpp plugin to use system onetbb + patch -Np1 -i fix-plugin.patch +} build() { mkdir build diff --git a/fix-plugin.patch b/fix-plugin.patch new file mode 100644 index 000000000000..34316ccb498c --- /dev/null +++ b/fix-plugin.patch @@ -0,0 +1,17 @@ +diff --git a/rstan/R/plugin.R b/rstan/R/plugin.R +index d254ce4..659c48a 100644 +--- a/rstan/R/plugin.R ++++ b/rstan/R/plugin.R +@@ -96,8 +96,10 @@ rstanplugin <- function() { + else { + StanHeaders_pkg_libs <- system.file("lib", .Platform$r_arch, + package = "StanHeaders", mustWork = TRUE) +- RcppParallel_pkg_libs <- system.file("lib", .Platform$r_arch, +- package = "RcppParallel", mustWork = TRUE) ++ RcppParallel_pkg_libs <- file.path(system.file(package = "RcppParallel", mustWork = TRUE), "lib") ++ if (!dir.exists(RcppParallel_pkg_libs)) { ++ RcppParallel_pkg_libs <- "/usr/lib" ++ } + rstan_StanServices <- system.file("lib", .Platform$r_arch, "libStanServices.a", + package = "rstan", mustWork = TRUE) + } |