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author | BioArchLinuxBot | 2023-09-14 18:39:19 +0000 |
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committer | BioArchLinuxBot | 2023-09-14 18:39:19 +0000 |
commit | dda3e78f64fdd072ed2d75fca6da19e5e4ed44d2 (patch) | |
tree | ca7458a3c8d3e948a1db4977dc7284cd2f7fe3df | |
parent | 06370012c068bc932d78254f33406ae5955838c9 (diff) | |
download | aur-dda3e78f64fdd072ed2d75fca6da19e5e4ed44d2.tar.gz |
[lilac] updated to 2.26.1-2
-rw-r--r-- | .SRCINFO | 23 | ||||
-rw-r--r-- | PKGBUILD | 60 |
2 files changed, 55 insertions, 28 deletions
@@ -1,25 +1,29 @@ pkgbase = r-rstanarm pkgdesc = Bayesian Applied Regression Modeling via Stan pkgver = 2.26.1 - pkgrel = 1 + pkgrel = 2 url = https://cran.r-project.org/package=rstanarm arch = x86_64 - license = GPL - makedepends = make - depends = r + license = GPL3 + checkdepends = r-betareg + checkdepends = r-biglm + checkdepends = r-data.table + checkdepends = r-hsaur3 + checkdepends = r-testthat + makedepends = r-bh + makedepends = r-rcppeigen + makedepends = r-stanheaders + depends = pandoc depends = r-bayesplot - depends = r-bh depends = r-ggplot2 depends = r-lme4 depends = r-loo + depends = r-posterior depends = r-rcpp - depends = r-rcppeigen depends = r-rcppparallel depends = r-rstan depends = r-rstantools depends = r-shinystan - depends = r-stanheaders - depends = pandoc optdepends = r-betareg optdepends = r-biglm optdepends = r-data.table @@ -28,14 +32,13 @@ pkgbase = r-rstanarm optdepends = r-gridextra optdepends = r-hsaur3 optdepends = r-knitr - optdepends = r-mass - optdepends = r-mgcv optdepends = r-rmarkdown optdepends = r-roxygen2 optdepends = r-shiny optdepends = r-stanheaders optdepends = r-testthat source = https://cran.r-project.org/src/contrib/rstanarm_2.26.1.tar.gz + md5sums = 8505a33ae9ff139e9f0b3d5b8cc6ee7e sha256sums = 4a54792d6e035931b613647aebfc98b81d1aac646a5a3f6f116b6f560d544444 pkgname = r-rstanarm @@ -1,30 +1,39 @@ -# system requirements: GNU make, pandoc (>= 1.12.3), pandoc-citeproc -# Maintainer: sukanka <su975853527@gmail.com> +# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com> +# Contributor: sukanka <su975853527@gmail.com> _pkgname=rstanarm _pkgver=2.26.1 pkgname=r-${_pkgname,,} -pkgver=2.26.1 -pkgrel=1 -pkgdesc='Bayesian Applied Regression Modeling via Stan' -arch=('x86_64') +pkgver=${_pkgver//-/.} +pkgrel=2 +pkgdesc="Bayesian Applied Regression Modeling via Stan" +arch=(x86_64) url="https://cran.r-project.org/package=${_pkgname}" -license=('GPL') +license=(GPL3) depends=( - r + pandoc r-bayesplot - r-bh r-ggplot2 r-lme4 r-loo + r-posterior r-rcpp - r-rcppeigen r-rcppparallel r-rstan r-rstantools r-shinystan +) +makedepends=( + r-bh + r-rcppeigen r-stanheaders - pandoc +) +checkdepends=( + r-betareg + r-biglm + r-data.table + r-hsaur3 + r-testthat ) optdepends=( r-betareg @@ -35,24 +44,39 @@ optdepends=( r-gridextra r-hsaur3 r-knitr - r-mass - r-mgcv r-rmarkdown r-roxygen2 r-shiny r-stanheaders r-testthat ) -makedepends=('make') source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +md5sums=('8505a33ae9ff139e9f0b3d5b8cc6ee7e') sha256sums=('4a54792d6e035931b613647aebfc98b81d1aac646a5a3f6f116b6f560d544444') +prepare() { + cd "$_pkgname/tests/testthat" + # skip tests that make a coredump + sed -e '/"stan_betareg ok when modeling x and z (link.phi = '\'sqrt\'')"/a\ \ skip("dumps core")' \ + -e '/"heavy tailed priors work with stan_betareg"/a\ \ skip("dumps core")' \ + -i test_stan_betareg.R + sed -i '1i skip("dumps core")' test_stan_jm.R + sed -i '/"multiple grouping factors are ok"/a\ \ skip("dumps core")' test_stan_mvmer.R +} + build() { - R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" + mkdir -p build + # compilation needs a lot of memory + MAKEFLAGS+=" -j1" + R CMD INSTALL "$_pkgname" -l build +} + +check() { + cd "$_pkgname/tests" + R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R } package() { - install -dm0755 "${pkgdir}/usr/lib/R/library" - cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" + install -d "$pkgdir/usr/lib/R/library" + cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library" } -# vim:set ts=2 sw=2 et: |