add r-rtracklayer

2 files changed, 90 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..55c21b1c8495
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,37 @@
+pkgbase = r-rtracklayer
+	pkgdesc = R interface to genome annotation files and the UCSC genome browser
+	pkgver = 1.56.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/rtracklayer
+	arch = x86_64
+	license = Artistic2.0
+	depends = r
+	depends = r-biocgenerics
+	depends = r-biocio
+	depends = r-biostrings
+	depends = r-genomeinfodb
+	depends = r-genomicalignments
+	depends = r-genomicranges
+	depends = r-iranges
+	depends = r-rcurl
+	depends = r-restfulr
+	depends = r-rsamtools
+	depends = r-s4vectors
+	depends = r-xml
+	depends = r-xvector
+	depends = r-zlibbioc
+	optdepends = r-bsgenome
+	optdepends = r-bsgenome.hsapiens.ucsc.hg19
+	optdepends = r-genefilter
+	optdepends = r-genomicfeatures
+	optdepends = r-hgu133plus2.db
+	optdepends = r-humanstemcell
+	optdepends = r-limma
+	optdepends = r-microrna
+	optdepends = r-org.hs.eg.db
+	optdepends = r-runit
+	optdepends = r-txdb.hsapiens.ucsc.hg19.knowngene
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/rtracklayer_1.56.0.tar.gz
+	sha256sums = cd215e2e7c0c5ab27c037869289598a25b300537d7ee8181dc6ce6dcc3543ab5
+
+pkgname = r-rtracklayer
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..6542809edb69
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,53 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=rtracklayer
+_pkgver=1.56.0
+pkgname=r-${_pkgname,,}
+pkgver=1.56.0
+pkgrel=1
+pkgdesc='R interface to genome annotation files and the UCSC genome browser'
+arch=('x86_64')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('Artistic2.0')
+depends=(
+  r
+  r-biocgenerics
+  r-biocio
+  r-biostrings
+  r-genomeinfodb
+  r-genomicalignments
+  r-genomicranges
+  r-iranges
+  r-rcurl
+  r-restfulr
+  r-rsamtools
+  r-s4vectors
+  r-xml
+  r-xvector
+  r-zlibbioc
+)
+optdepends=(
+  r-bsgenome
+  r-bsgenome.hsapiens.ucsc.hg19
+  r-genefilter
+  r-genomicfeatures
+  r-hgu133plus2.db
+  r-humanstemcell
+  r-limma
+  r-microrna
+  r-org.hs.eg.db
+  r-runit
+  r-txdb.hsapiens.ucsc.hg19.knowngene
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('cd215e2e7c0c5ab27c037869289598a25b300537d7ee8181dc6ce6dcc3543ab5')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: