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| author | Sukanka | 2022-06-06 21:55:39 +0800 |
|---|---|---|
| committer | Sukanka | 2022-06-06 21:55:39 +0800 |
| commit | e2a4274ebc6d95ac47b276c800b5a733e36d83c8 (patch) | |
| tree | b0be4d6627889610b4494e22fb1670207b658ea9 | |
| download | aur-e2a4274ebc6d95ac47b276c800b5a733e36d83c8.tar.gz | |
add r-saigegds
| -rw-r--r-- | .SRCINFO | 26 | ||||
| -rw-r--r-- | PKGBUILD | 43 |
2 files changed, 69 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO new file mode 100644 index 000000000000..8b24581a8087 --- /dev/null +++ b/.SRCINFO @@ -0,0 +1,26 @@ +pkgbase = r-saigegds + pkgdesc = Scalable Implementation of Generalized mixed models using GDS files in Phenome-Wide Association Studies + pkgver = 1.10.0 + pkgrel = 1 + url = https://bioconductor.org/packages/SAIGEgds + arch = x86_64 + license = GPL + depends = r + depends = r-gdsfmt + depends = r-rcpp + depends = r-rcpparmadillo + depends = r-rcppparallel + depends = r-seqarray + depends = r-spatest + optdepends = r-biocgenerics + optdepends = r-crayon + optdepends = r-knitr + optdepends = r-markdown + optdepends = r-parallel + optdepends = r-rmarkdown + optdepends = r-runit + optdepends = r-snprelate + source = https://bioconductor.org/packages/release/bioc/src/contrib/SAIGEgds_1.10.0.tar.gz + sha256sums = f1305b545ab1dc1ea9612a5fcbbe61e5aa9cc366839f0eb14ab1bd89a3f27c63 + +pkgname = r-saigegds diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..5a43cbc303d0 --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,43 @@ +# system requirements: C++11, GNU make +# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> + +_pkgname=SAIGEgds +_pkgver=1.10.0 +pkgname=r-${_pkgname,,} +pkgver=1.10.0 +pkgrel=1 +pkgdesc='Scalable Implementation of Generalized mixed models using GDS files in Phenome-Wide Association Studies' +arch=('x86_64') +url="https://bioconductor.org/packages/${_pkgname}" +license=('GPL') +depends=( + r + r-gdsfmt + r-rcpp + r-rcpparmadillo + r-rcppparallel + r-seqarray + r-spatest +) +optdepends=( + r-biocgenerics + r-crayon + r-knitr + r-markdown + r-parallel + r-rmarkdown + r-runit + r-snprelate +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +sha256sums=('f1305b545ab1dc1ea9612a5fcbbe61e5aa9cc366839f0eb14ab1bd89a3f27c63') + +build() { + R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" +} + +package() { + install -dm0755 "${pkgdir}/usr/lib/R/library" + cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" +} +# vim:set ts=2 sw=2 et: |