add r-scanvis

2 files changed, 53 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..5bb643be339a
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,18 @@
+pkgbase = r-scanvis
+	pkgdesc = SCANVIS - a tool for SCoring, ANnotating and VISualizing splice junctions
+	pkgver = 1.10.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/SCANVIS
+	arch = any
+	license = custom
+	depends = r
+	depends = r-iranges
+	depends = r-plotrix
+	depends = r-rcurl
+	depends = r-rtracklayer
+	optdepends = r-knitr
+	optdepends = r-rmarkdown
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/SCANVIS_1.10.0.tar.gz
+	sha256sums = 276c44e0c9db797442423f0851a22c8695f547eaa603c3b4ed72587f5ffdd38c
+
+pkgname = r-scanvis
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..6998b47ccaab
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,35 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=SCANVIS
+_pkgver=1.10.0
+pkgname=r-${_pkgname,,}
+pkgver=1.10.0
+pkgrel=1
+pkgdesc='SCANVIS - a tool for SCoring, ANnotating and VISualizing splice junctions'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('custom')
+depends=(
+  r
+  r-iranges
+  r-plotrix
+  r-rcurl
+  r-rtracklayer
+)
+optdepends=(
+  r-knitr
+  r-rmarkdown
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('276c44e0c9db797442423f0851a22c8695f547eaa603c3b4ed72587f5ffdd38c')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+  install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
+}
+# vim:set ts=2 sw=2 et: