Version 1.6.0

2 files changed, 119 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..74c86198ced1
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,46 @@
+pkgbase = r-sccomp
+	pkgdesc = Robust Outlier-aware Estimation of Composition and Heterogeneity for Single-cell Data
+	pkgver = 1.6.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/sccomp
+	arch = x86_64
+	license = GPL3
+	checkdepends = r-testthat
+	checkdepends = r-tidyseurat
+	makedepends = r-bh
+	makedepends = r-rcppeigen
+	makedepends = r-stanheaders
+	depends = r-dplyr
+	depends = r-forcats
+	depends = r-ggplot2
+	depends = r-ggrepel
+	depends = r-glue
+	depends = r-lifecycle
+	depends = r-magrittr
+	depends = r-patchwork
+	depends = r-purrr
+	depends = r-rcpp
+	depends = r-rcppparallel
+	depends = r-readr
+	depends = r-rlang
+	depends = r-rstan
+	depends = r-rstantools
+	depends = r-scales
+	depends = r-seuratobject
+	depends = r-singlecellexperiment
+	depends = r-stringr
+	depends = r-tibble
+	depends = r-tidyr
+	depends = r-tidyselect
+	optdepends = r-biocstyle
+	optdepends = r-knitr
+	optdepends = r-loo
+	optdepends = r-markdown
+	optdepends = r-testthat
+	optdepends = r-tidyseurat
+	optdepends = r-tidysinglecellexperiment
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/sccomp_1.6.0.tar.gz
+	md5sums = 8a24adb07d155b94645a5f684e1455f6
+	sha256sums = d1f4216eb85d47ff8a2f6403ab7a483b09cade88df5387ed5e9fca7f5c7c97a5
+
+pkgname = r-sccomp
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..bd868b81303b
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,73 @@
+# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
+
+_pkgname=sccomp
+_pkgver=1.6.0
+pkgname=r-${_pkgname,,}
+pkgver=${_pkgver//-/.}
+pkgrel=1
+pkgdesc="Robust Outlier-aware Estimation of Composition and Heterogeneity for Single-cell Data"
+arch=(x86_64)
+url="https://bioconductor.org/packages/${_pkgname}"
+license=(GPL3)
+depends=(
+  r-dplyr
+  r-forcats
+  r-ggplot2
+  r-ggrepel
+  r-glue
+  r-lifecycle
+  r-magrittr
+  r-patchwork
+  r-purrr
+  r-rcpp
+  r-rcppparallel
+  r-readr
+  r-rlang
+  r-rstan
+  r-rstantools
+  r-scales
+  r-seuratobject
+  r-singlecellexperiment
+  r-stringr
+  r-tibble
+  r-tidyr
+  r-tidyselect
+)
+makedepends=(
+  r-bh
+  r-rcppeigen
+  r-stanheaders
+)
+checkdepends=(
+  r-testthat
+  r-tidyseurat
+)
+optdepends=(
+  r-biocstyle
+  r-knitr
+  r-loo
+  r-markdown
+  r-testthat
+  r-tidyseurat
+  r-tidysinglecellexperiment
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+md5sums=('8a24adb07d155b94645a5f684e1455f6')
+sha256sums=('d1f4216eb85d47ff8a2f6403ab7a483b09cade88df5387ed5e9fca7f5c7c97a5')
+
+build() {
+  mkdir -p build
+  # compilation needs a lot of memory
+  MAKEFLAGS+=" -j1"
+  R CMD INSTALL "$_pkgname" -l build
+}
+
+check() {
+  cd "$_pkgname/tests"
+  R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
+}
+
+package() {
+  install -d "$pkgdir/usr/lib/R/library"
+  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
+}