Version 1.4.0

2 files changed, 79 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..349bd98b5451
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,27 @@
+pkgbase = r-scddboost
+	pkgdesc = A compositional model to assess expression changes from single-cell rna-seq data
+	pkgver = 1.4.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/scDDboost
+	arch = x86_64
+	license = GPL
+	checkdepends = r-testthat
+	makedepends = r-bh
+	depends = r-biocparallel
+	depends = r-ebseq
+	depends = r-ggplot2
+	depends = r-mclust
+	depends = r-oscope
+	depends = r-rcpp
+	depends = r-rcppeigen
+	depends = r-singlecellexperiment
+	depends = r-summarizedexperiment
+	optdepends = r-biocstyle
+	optdepends = r-knitr
+	optdepends = r-rmarkdown
+	optdepends = r-testthat
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/scDDboost_1.4.0.tar.gz
+	md5sums = ac0cac5975ebe4025ea07ad00e132847
+	sha256sums = e92ba350e3f9b73a22f634c8e81dd52b8666f905092bfbb0f264dc2863b76f87
+
+pkgname = r-scddboost
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..426a7115fa30
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,52 @@
+# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
+
+_pkgname=scDDboost
+_pkgver=1.4.0
+pkgname=r-${_pkgname,,}
+pkgver=${_pkgver//-/.}
+pkgrel=1
+pkgdesc="A compositional model to assess expression changes from single-cell rna-seq data"
+arch=(x86_64)
+url="https://bioconductor.org/packages/${_pkgname}"
+license=(GPL)
+depends=(
+  r-biocparallel
+  r-ebseq
+  r-ggplot2
+  r-mclust
+  r-oscope
+  r-rcpp
+  r-rcppeigen
+  r-singlecellexperiment
+  r-summarizedexperiment
+)
+makedepends=(
+  r-bh
+)
+checkdepends=(
+  r-testthat
+)
+optdepends=(
+  r-biocstyle
+  r-knitr
+  r-rmarkdown
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+md5sums=('ac0cac5975ebe4025ea07ad00e132847')
+sha256sums=('e92ba350e3f9b73a22f634c8e81dd52b8666f905092bfbb0f264dc2863b76f87')
+
+build() {
+  mkdir -p build
+  R CMD INSTALL "$_pkgname" -l build
+}
+
+check() {
+  cd "$_pkgname/tests"
+  R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
+}
+
+package() {
+  install -d "$pkgdir/usr/lib/R/library"
+  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
+}