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| author | Sukanka | 2022-06-06 22:14:31 +0800 |
|---|---|---|
| committer | Sukanka | 2022-06-06 22:14:31 +0800 |
| commit | 9f8a681469f914a985c358412eea684080038255 (patch) | |
| tree | 55c60b113856052fbd493c59406436116e8fe784 | |
| download | aur-9f8a681469f914a985c358412eea684080038255.tar.gz | |
add r-scds
| -rw-r--r-- | .SRCINFO | 25 | ||||
| -rw-r--r-- | PKGBUILD | 42 |
2 files changed, 67 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO new file mode 100644 index 000000000000..c2ccd3ba283b --- /dev/null +++ b/.SRCINFO @@ -0,0 +1,25 @@ +pkgbase = r-scds + pkgdesc = In-Silico Annotation of Doublets for Single Cell RNA Sequencing Data + pkgver = 1.12.0 + pkgrel = 1 + url = https://bioconductor.org/packages/scds + arch = any + license = MIT + depends = r + depends = r-dplyr + depends = r-proc + depends = r-s4vectors + depends = r-singlecellexperiment + depends = r-summarizedexperiment + depends = r-xgboost + optdepends = r-biocstyle + optdepends = r-cowplot + optdepends = r-knitr + optdepends = r-rmarkdown + optdepends = r-rsvd + optdepends = r-rtsne + optdepends = r-scater + source = https://bioconductor.org/packages/release/bioc/src/contrib/scds_1.12.0.tar.gz + sha256sums = b01cd48aa3788fe0cbb3f46cf7dcd906386eca809bb8d5150b0f98de9c86b87e + +pkgname = r-scds diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..b565ea3cc7e3 --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,42 @@ +# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> + +_pkgname=scds +_pkgver=1.12.0 +pkgname=r-${_pkgname,,} +pkgver=1.12.0 +pkgrel=1 +pkgdesc='In-Silico Annotation of Doublets for Single Cell RNA Sequencing Data' +arch=('any') +url="https://bioconductor.org/packages/${_pkgname}" +license=('MIT') +depends=( + r + r-dplyr + r-proc + r-s4vectors + r-singlecellexperiment + r-summarizedexperiment + r-xgboost +) +optdepends=( + r-biocstyle + r-cowplot + r-knitr + r-rmarkdown + r-rsvd + r-rtsne + r-scater +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +sha256sums=('b01cd48aa3788fe0cbb3f46cf7dcd906386eca809bb8d5150b0f98de9c86b87e') + +build() { + R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" +} + +package() { + install -dm0755 "${pkgdir}/usr/lib/R/library" + cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" + install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}" +} +# vim:set ts=2 sw=2 et: |