add r-scfeaturefilter

2 files changed, 67 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..8a70b3c2d811
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,25 @@
+pkgbase = r-scfeaturefilter
+	pkgdesc = A correlation-based method for quality filtering of single-cell RNAseq data
+	pkgver = 1.16.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/scFeatureFilter
+	arch = any
+	license = MIT
+	depends = r
+	depends = r-dplyr
+	depends = r-ggplot2
+	depends = r-magrittr
+	depends = r-rlang
+	depends = r-tibble
+	optdepends = r-biocstyle
+	optdepends = r-cowplot
+	optdepends = r-knitr
+	optdepends = r-rmarkdown
+	optdepends = r-scrnaseq
+	optdepends = r-singlecellexperiment
+	optdepends = r-summarizedexperiment
+	optdepends = r-testthat
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/scFeatureFilter_1.16.0.tar.gz
+	sha256sums = 5175bf36ebed250c960f8ada764eb902be19552927045a048cc86461624bdc5a
+
+pkgname = r-scfeaturefilter
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..5048aa894a3f
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,42 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=scFeatureFilter
+_pkgver=1.16.0
+pkgname=r-${_pkgname,,}
+pkgver=1.16.0
+pkgrel=1
+pkgdesc='A correlation-based method for quality filtering of single-cell RNAseq data'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('MIT')
+depends=(
+  r
+  r-dplyr
+  r-ggplot2
+  r-magrittr
+  r-rlang
+  r-tibble
+)
+optdepends=(
+  r-biocstyle
+  r-cowplot
+  r-knitr
+  r-rmarkdown
+  r-scrnaseq
+  r-singlecellexperiment
+  r-summarizedexperiment
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('5175bf36ebed250c960f8ada764eb902be19552927045a048cc86461624bdc5a')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+  install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
+}
+# vim:set ts=2 sw=2 et: