Version 1.0.0

2 files changed, 87 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..615b3b86e0fa
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,32 @@
+pkgbase = r-scider
+	pkgdesc = Spatial cell-type inter-correlation by density in R
+	pkgver = 1.0.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/scider
+	arch = any
+	license = GPL3
+	checkdepends = r-edger
+	checkdepends = r-testthat
+	depends = r-ggplot2
+	depends = r-igraph
+	depends = r-isoband
+	depends = r-janitor
+	depends = r-knitr
+	depends = r-lwgeom
+	depends = r-pheatmap
+	depends = r-plotly
+	depends = r-rlang
+	depends = r-s4vectors
+	depends = r-sf
+	depends = r-shiny
+	depends = r-spatialexperiment
+	depends = r-spatstat.explore
+	depends = r-spatstat.geom
+	depends = r-summarizedexperiment
+	optdepends = r-edger
+	optdepends = r-testthat
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/scider_1.0.0.tar.gz
+	md5sums = d20e0e846be7368da2613650b3834957
+	sha256sums = 0b54660caa2f18fa624319f51f8971d29e067b56546f4bfd50cfb4dd5f8187e6
+
+pkgname = r-scider
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..539a3668221d
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,55 @@
+# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
+
+_pkgname=scider
+_pkgver=1.0.0
+pkgname=r-${_pkgname,,}
+pkgver=${_pkgver//-/.}
+pkgrel=1
+pkgdesc="Spatial cell-type inter-correlation by density in R"
+arch=(any)
+url="https://bioconductor.org/packages/${_pkgname}"
+license=(GPL3)
+depends=(
+  r-ggplot2
+  r-igraph
+  r-isoband
+  r-janitor
+  r-knitr
+  r-lwgeom
+  r-pheatmap
+  r-plotly
+  r-rlang
+  r-s4vectors
+  r-sf
+  r-shiny
+  r-spatialexperiment
+  r-spatstat.explore
+  r-spatstat.geom
+  r-summarizedexperiment
+)
+checkdepends=(
+  r-edger
+  r-testthat
+)
+optdepends=(
+  r-edger
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+md5sums=('d20e0e846be7368da2613650b3834957')
+sha256sums=('0b54660caa2f18fa624319f51f8971d29e067b56546f4bfd50cfb4dd5f8187e6')
+
+build() {
+  mkdir -p build
+  R CMD INSTALL "$_pkgname" -l build
+}
+
+check() {
+  cd "$_pkgname/tests"
+  R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
+}
+
+package() {
+  install -d "$pkgdir/usr/lib/R/library"
+  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
+}