Version 1.4.0

2 files changed, 90 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..5c20bf302cc1
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,32 @@
+pkgbase = r-scifer
+	pkgdesc = Scifer: Single-Cell Immunoglobulin Filtering of Sanger Sequences
+	pkgver = 1.4.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/scifer
+	arch = any
+	license = MIT
+	checkdepends = r-testthat
+	depends = r-biostrings
+	depends = r-data.table
+	depends = r-decipher
+	depends = r-dplyr
+	depends = r-flowcore
+	depends = r-ggplot2
+	depends = r-gridextra
+	depends = r-kableextra
+	depends = r-knitr
+	depends = r-plyr
+	depends = r-rlang
+	depends = r-rmarkdown
+	depends = r-sangerseqr
+	depends = r-scales
+	depends = r-stringr
+	depends = r-tibble
+	optdepends = r-biocstyle
+	optdepends = r-fs
+	optdepends = r-testthat
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/scifer_1.4.0.tar.gz
+	md5sums = 82fb184bec0c09d5f7067baf81f8fee1
+	sha256sums = cbd79f689765c6cabea9ccbd4ecab9f7e847aec07a629ec5e297d18728f037c1
+
+pkgname = r-scifer
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..94179af5ee27
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,58 @@
+# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
+
+_pkgname=scifer
+_pkgver=1.4.0
+pkgname=r-${_pkgname,,}
+pkgver=${_pkgver//-/.}
+pkgrel=1
+pkgdesc="Scifer: Single-Cell Immunoglobulin Filtering of Sanger Sequences"
+arch=(any)
+url="https://bioconductor.org/packages/${_pkgname}"
+license=(MIT)
+depends=(
+  r-biostrings
+  r-data.table
+  r-decipher
+  r-dplyr
+  r-flowcore
+  r-ggplot2
+  r-gridextra
+  r-kableextra
+  r-knitr
+  r-plyr
+  r-rlang
+  r-rmarkdown
+  r-sangerseqr
+  r-scales
+  r-stringr
+  r-tibble
+)
+checkdepends=(
+  r-testthat
+)
+optdepends=(
+  r-biocstyle
+  r-fs
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+md5sums=('82fb184bec0c09d5f7067baf81f8fee1')
+sha256sums=('cbd79f689765c6cabea9ccbd4ecab9f7e847aec07a629ec5e297d18728f037c1')
+
+build() {
+  mkdir -p build
+  R CMD INSTALL "$_pkgname" -l build
+}
+
+check() {
+  cd "$_pkgname/tests"
+  R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
+}
+
+package() {
+  install -d "$pkgdir/usr/lib/R/library"
+  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
+
+  install -d "$pkgdir/usr/share/licenses/$pkgname"
+  ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
+}