add r-scone

2 files changed, 118 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..038559eb4459
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,51 @@
+pkgbase = r-scone
+	pkgdesc = Single Cell Overview of Normalized Expression data
+	pkgver = 1.20.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/scone
+	arch = any
+	license = Artistic2.0
+	depends = r
+	depends = r-aroma.light
+	depends = r-biocparallel
+	depends = r-compositions
+	depends = r-diptest
+	depends = r-edger
+	depends = r-fpc
+	depends = r-gplots
+	depends = r-hexbin
+	depends = r-limma
+	depends = r-matrixgenerics
+	depends = r-matrixstats
+	depends = r-mixtools
+	depends = r-rarpack
+	depends = r-rcolorbrewer
+	depends = r-rhdf5
+	depends = r-ruvseq
+	depends = r-singlecellexperiment
+	depends = r-summarizedexperiment
+	optdepends = r-batchjobs
+	optdepends = r-biocstyle
+	optdepends = r-doparallel
+	optdepends = r-dt
+	optdepends = r-ggplot2
+	optdepends = r-kableextra
+	optdepends = r-knitr
+	optdepends = r-mclust
+	optdepends = r-miniui
+	optdepends = r-nmf
+	optdepends = r-plotly
+	optdepends = r-reshape2
+	optdepends = r-rmarkdown
+	optdepends = r-scater
+	optdepends = r-scran
+	optdepends = r-scrnaseq
+	optdepends = r-shiny
+	optdepends = r-splatter
+	optdepends = r-tenxpbmcdata
+	optdepends = r-testthat
+	optdepends = r-visnetwork
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/scone_1.20.0.tar.gz
+	sha256sums = a1a0936e8bcb215ebe9a7d26bfaaa838a5d177aee54116141cc0c66a2c192d16
+
+pkgname = r-scone
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..a36dd1f8fc36
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,67 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=scone
+_pkgver=1.20.0
+pkgname=r-${_pkgname,,}
+pkgver=1.20.0
+pkgrel=1
+pkgdesc='Single Cell Overview of Normalized Expression data'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('Artistic2.0')
+depends=(
+  r
+  r-aroma.light
+  r-biocparallel
+  r-compositions
+  r-diptest
+  r-edger
+  r-fpc
+  r-gplots
+  r-hexbin
+  r-limma
+  r-matrixgenerics
+  r-matrixstats
+  r-mixtools
+  r-rarpack
+  r-rcolorbrewer
+  r-rhdf5
+  r-ruvseq
+  r-singlecellexperiment
+  r-summarizedexperiment
+)
+optdepends=(
+  r-batchjobs
+  r-biocstyle
+  r-doparallel
+  r-dt
+  r-ggplot2
+  r-kableextra
+  r-knitr
+  r-mclust
+  r-miniui
+  r-nmf
+  r-plotly
+  r-reshape2
+  r-rmarkdown
+  r-scater
+  r-scran
+  r-scrnaseq
+  r-shiny
+  r-splatter
+  r-tenxpbmcdata
+  r-testthat
+  r-visnetwork
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('a1a0936e8bcb215ebe9a7d26bfaaa838a5d177aee54116141cc0c66a2c192d16')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: