add r-scran

2 files changed, 107 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..3b632bd0fdc1
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,45 @@
+pkgbase = r-scran
+	pkgdesc = Methods for Single-Cell RNA-Seq Data Analysis
+	pkgver = 1.24.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/scran
+	arch = x86_64
+	license = GPL
+	depends = r
+	depends = r-beachmat
+	depends = r-bh
+	depends = r-biocgenerics
+	depends = r-biocparallel
+	depends = r-biocsingular
+	depends = r-bluster
+	depends = r-delayedarray
+	depends = r-delayedmatrixstats
+	depends = r-dqrng
+	depends = r-edger
+	depends = r-igraph
+	depends = r-limma
+	depends = r-metapod
+	depends = r-rcpp
+	depends = r-s4vectors
+	depends = r-scuttle
+	depends = r-singlecellexperiment
+	depends = r-statmod
+	depends = r-summarizedexperiment
+	optdepends = r-biobase
+	optdepends = r-biocstyle
+	optdepends = r-deseq2
+	optdepends = r-dynamictreecut
+	optdepends = r-hdf5array
+	optdepends = r-knitr
+	optdepends = r-monocle
+	optdepends = r-pheatmap
+	optdepends = r-residualmatrix
+	optdepends = r-rmarkdown
+	optdepends = r-scaledmatrix
+	optdepends = r-scater
+	optdepends = r-scrnaseq
+	optdepends = r-testthat
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/scran_1.24.0.tar.gz
+	sha256sums = 1c997e6c653e74bc99a4b249ead5490e47523553adcf5f6f31aa8454066de775
+
+pkgname = r-scran
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..232bfa2d30de
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,62 @@
+# system requirements: C++11
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=scran
+_pkgver=1.24.0
+pkgname=r-${_pkgname,,}
+pkgver=1.24.0
+pkgrel=1
+pkgdesc='Methods for Single-Cell RNA-Seq Data Analysis'
+arch=('x86_64')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('GPL')
+depends=(
+  r
+  r-beachmat
+  r-bh
+  r-biocgenerics
+  r-biocparallel
+  r-biocsingular
+  r-bluster
+  r-delayedarray
+  r-delayedmatrixstats
+  r-dqrng
+  r-edger
+  r-igraph
+  r-limma
+  r-metapod
+  r-rcpp
+  r-s4vectors
+  r-scuttle
+  r-singlecellexperiment
+  r-statmod
+  r-summarizedexperiment
+)
+optdepends=(
+  r-biobase
+  r-biocstyle
+  r-deseq2
+  r-dynamictreecut
+  r-hdf5array
+  r-knitr
+  r-monocle
+  r-pheatmap
+  r-residualmatrix
+  r-rmarkdown
+  r-scaledmatrix
+  r-scater
+  r-scrnaseq
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('1c997e6c653e74bc99a4b249ead5490e47523553adcf5f6f31aa8454066de775')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: