add r-screcover

2 files changed, 72 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..108474c496fe
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,28 @@
+pkgbase = r-screcover
+	pkgdesc = scRecover for imputation of single-cell RNA-seq data
+	pkgver = 1.12.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/scRecover
+	arch = any
+	license = GPL
+	depends = r
+	depends = r-bbmle
+	depends = r-biocparallel
+	depends = r-doparallel
+	depends = r-foreach
+	depends = r-gamlss
+	depends = r-kernlab
+	depends = r-penalized
+	depends = r-preseqr
+	depends = r-pscl
+	depends = r-rmagic
+	depends = r-rsvd
+	depends = r-saver
+	optdepends = r-knitr
+	optdepends = r-rmarkdown
+	optdepends = r-singlecellexperiment
+	optdepends = r-testthat
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/scRecover_1.12.0.tar.gz
+	sha256sums = 5bfed3c9c3e0420dee836a53465c3dd094bd22ffa823ef2fdc5aab142329725c
+
+pkgname = r-screcover
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..2b87c7dfcc8c
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,44 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=scRecover
+_pkgver=1.12.0
+pkgname=r-${_pkgname,,}
+pkgver=1.12.0
+pkgrel=1
+pkgdesc='scRecover for imputation of single-cell RNA-seq data'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('GPL')
+depends=(
+  r
+  r-bbmle
+  r-biocparallel
+  r-doparallel
+  r-foreach
+  r-gamlss
+  r-kernlab
+  r-penalized
+  r-preseqr
+  r-pscl
+  r-rmagic
+  r-rsvd
+  r-saver
+)
+optdepends=(
+  r-knitr
+  r-rmarkdown
+  r-singlecellexperiment
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('5bfed3c9c3e0420dee836a53465c3dd094bd22ffa823ef2fdc5aab142329725c')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: