add r-sctensor

2 files changed, 114 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..a7c285514ade
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,49 @@
+pkgbase = r-sctensor
+	pkgdesc = Detection of cell-cell interaction from single-cell RNA-seq dataset by tensor decomposition
+	pkgver = 2.6.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/scTensor
+	arch = any
+	license = Artistic2.0
+	depends = r
+	depends = r-abind
+	depends = r-annotationdbi
+	depends = r-annotationhub
+	depends = r-biocmanager
+	depends = r-biocstyle
+	depends = r-category
+	depends = r-cctensor
+	depends = r-checkmate
+	depends = r-crayon
+	depends = r-dose
+	depends = r-ggplot2
+	depends = r-gostats
+	depends = r-heatmaply
+	depends = r-igraph
+	depends = r-knitr
+	depends = r-meshdbi
+	depends = r-meshr
+	depends = r-nntensor
+	depends = r-outliers
+	depends = r-plotly
+	depends = r-plotrix
+	depends = r-reactome.db
+	depends = r-reactomepa
+	depends = r-rmarkdown
+	depends = r-rsqlite
+	depends = r-rtensor
+	depends = r-s4vectors
+	depends = r-schex
+	depends = r-singlecellexperiment
+	depends = r-summarizedexperiment
+	depends = r-tagcloud
+	depends = r-visnetwork
+	optdepends = r-homo.sapiens
+	optdepends = r-lrbasedbi
+	optdepends = r-sctgif
+	optdepends = r-seurat
+	optdepends = r-testthat
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/scTensor_2.6.0.tar.gz
+	sha256sums = 5c52678685a9e5b8a05fc5c60d6fc7e16fecbb7241d5b3469f012b447097783c
+
+pkgname = r-sctensor
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..b896c2436ff7
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,65 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=scTensor
+_pkgver=2.6.0
+pkgname=r-${_pkgname,,}
+pkgver=2.6.0
+pkgrel=1
+pkgdesc='Detection of cell-cell interaction from single-cell RNA-seq dataset by tensor decomposition'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('Artistic2.0')
+depends=(
+  r
+  r-abind
+  r-annotationdbi
+  r-annotationhub
+  r-biocmanager
+  r-biocstyle
+  r-category
+  r-cctensor
+  r-checkmate
+  r-crayon
+  r-dose
+  r-ggplot2
+  r-gostats
+  r-heatmaply
+  r-igraph
+  r-knitr
+  r-meshdbi
+  r-meshr
+  r-nntensor
+  r-outliers
+  r-plotly
+  r-plotrix
+  r-reactome.db
+  r-reactomepa
+  r-rmarkdown
+  r-rsqlite
+  r-rtensor
+  r-s4vectors
+  r-schex
+  r-singlecellexperiment
+  r-summarizedexperiment
+  r-tagcloud
+  r-visnetwork
+)
+optdepends=(
+  r-homo.sapiens
+  r-lrbasedbi
+  r-sctgif
+  r-seurat
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('5c52678685a9e5b8a05fc5c60d6fc7e16fecbb7241d5b3469f012b447097783c')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: