add r-scuttle

2 files changed, 73 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..15ea5b12c1fc
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,28 @@
+pkgbase = r-scuttle
+	pkgdesc = Single-Cell RNA-Seq Analysis Utilities
+	pkgver = 1.6.2
+	pkgrel = 3
+	url = https://bioconductor.org/packages/scuttle
+	arch = x86_64
+	license = GPL
+	depends = r
+	depends = r-beachmat
+	depends = r-biocgenerics
+	depends = r-biocparallel
+	depends = r-delayedarray
+	depends = r-delayedmatrixstats
+	depends = r-genomicranges
+	depends = r-rcpp
+	depends = r-s4vectors
+	depends = r-singlecellexperiment
+	depends = r-summarizedexperiment
+	optdepends = r-biocstyle
+	optdepends = r-knitr
+	optdepends = r-rmarkdown
+	optdepends = r-scran
+	optdepends = r-scrnaseq
+	optdepends = r-testthat
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/scuttle_1.6.2.tar.gz
+	sha256sums = f64fe1c7478b45d062656cfd2ecad3341abb1b1d9eb0ac0857dd0ce2f8c0d55a
+
+pkgname = r-scuttle
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..2e41003deec4
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,45 @@
+# system requirements: C++11
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=scuttle
+_pkgver=1.6.2
+pkgname=r-${_pkgname,,}
+pkgver=1.6.2
+pkgrel=3
+pkgdesc='Single-Cell RNA-Seq Analysis Utilities'
+arch=('x86_64')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('GPL')
+depends=(
+  r
+  r-beachmat
+  r-biocgenerics
+  r-biocparallel
+  r-delayedarray
+  r-delayedmatrixstats
+  r-genomicranges
+  r-rcpp
+  r-s4vectors
+  r-singlecellexperiment
+  r-summarizedexperiment
+)
+optdepends=(
+  r-biocstyle
+  r-knitr
+  r-rmarkdown
+  r-scran
+  r-scrnaseq
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('f64fe1c7478b45d062656cfd2ecad3341abb1b1d9eb0ac0857dd0ce2f8c0d55a')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: