diff options
| author | Grey Christoforo | 2019-02-09 15:03:28 +0000 |
|---|---|---|
| committer | Grey Christoforo | 2019-02-09 15:03:28 +0000 |
| commit | 6557d3e9b9dd72beae3bc4adebdcba3f535164f2 (patch) | |
| tree | 5aa20bb632899f2186579188ced8ba2f12bd1ce3 | |
| download | aur-6557d3e9b9dd72beae3bc4adebdcba3f535164f2.tar.gz | |
initial commit
| -rw-r--r-- | .SRCINFO | 26 | ||||
| -rw-r--r-- | .gitignore | 4 | ||||
| -rw-r--r-- | PKGBUILD | 19 |
3 files changed, 49 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO new file mode 100644 index 000000000000..361e07324f60 --- /dev/null +++ b/.SRCINFO @@ -0,0 +1,26 @@ +pkgbase = r-shortread + pkgdesc = FASTQ input and manipulation + pkgver = 1.40.0 + pkgrel = 1 + url = https://bioconductor.org/packages/release/bioc/html/ShortRead.html + arch = x86_64 + license = Artistic-2.0 + depends = r + depends = r-biocgenerics + depends = r-biocparallel + depends = r-biostrings + depends = r-rsamtools + depends = r-genomicalignments + depends = r-biobase + depends = r-s4vectors + depends = r-iranges + depends = r-genomeinfodb + depends = r-genomicranges + depends = r-hwriter + depends = r-zlibbioc + depends = r-latticeextra + source = https://bioconductor.org/packages/release/bioc/src/contrib/ShortRead_1.40.0.tar.gz + sha1sums = 2bf569ce7b65710a90da3688086a056cf68f9e9e + +pkgname = r-shortread + diff --git a/.gitignore b/.gitignore new file mode 100644 index 000000000000..6ae0b18a1f6c --- /dev/null +++ b/.gitignore @@ -0,0 +1,4 @@ +/pkg +/src +*.tar.gz +*.tar.xz diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..51e864d975bc --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,19 @@ +# Contributor: Grey Christoforo <first name at last name dot net> +pkgname=r-shortread +_bc_name=ShortRead +pkgver=1.40.0 +pkgrel=1 +pkgdesc="FASTQ input and manipulation" +url="https://bioconductor.org/packages/release/bioc/html/${_bc_name}.html" +arch=("x86_64") +license=('Artistic-2.0') +depends=('r' 'r-biocgenerics' 'r-biocparallel' 'r-biostrings' 'r-rsamtools' 'r-genomicalignments' 'r-biobase' 'r-s4vectors' 'r-iranges' 'r-genomeinfodb' 'r-genomicranges' 'r-hwriter' 'r-zlibbioc' 'r-latticeextra') +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_bc_name}_${pkgver}.tar.gz") +sha1sums=('2bf569ce7b65710a90da3688086a056cf68f9e9e') + +package() { + mkdir -p $pkgdir/usr/lib/R/library + cd $srcdir + + R CMD INSTALL -l $pkgdir/usr/lib/R/library ./${_bc_name} +} |