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authorViktor Drobot2020-10-30 23:00:55 +0300
committerViktor Drobot2020-10-30 23:00:55 +0300
commitd78f03bf76878faa5b01c84ca7cca0b956915825 (patch)
treeaac985dff0053b8d1188a2b5c8c4ddeeb8b366e9
parentf6577a38114bcc86bc605e216d7484ae299aa964 (diff)
downloadaur-d78f03bf76878faa5b01c84ca7cca0b956915825.tar.gz
Update
-rw-r--r--.SRCINFO7
-rw-r--r--PKGBUILD5
2 files changed, 5 insertions, 7 deletions
diff --git a/.SRCINFO b/.SRCINFO
index 0a59201365eb..4374476aa3de 100644
--- a/.SRCINFO
+++ b/.SRCINFO
@@ -1,12 +1,11 @@
pkgbase = r-shortread
pkgdesc = FASTQ input and manipulation
- pkgver = 1.46.0
+ pkgver = 1.48.0
pkgrel = 1
url = https://bioconductor.org/packages/release/bioc/html/ShortRead.html
arch = i686
arch = x86_64
license = Artistic-2.0
- makedepends = gcc
depends = r
depends = r-biocgenerics>=0.23.3
depends = r-biocparallel
@@ -26,8 +25,8 @@ pkgbase = r-shortread
optdepends = r-biomart
optdepends = r-genomicfeatures
optdepends = r-yeastnagalakshmi
- source = https://bioconductor.org/packages/release/bioc/src/contrib/ShortRead_1.46.0.tar.gz
- md5sums = 1cb99240a3a440c0d28282f50b66b1a0
+ source = https://bioconductor.org/packages/release/bioc/src/contrib/ShortRead_1.48.0.tar.gz
+ sha256sums = 69badfa1ca5c075ff29adda33d6bd71a2b62433640dcea45ae15180347439570
pkgname = r-shortread
diff --git a/PKGBUILD b/PKGBUILD
index 0ddca34988cc..aa6bd7f44196 100644
--- a/PKGBUILD
+++ b/PKGBUILD
@@ -2,7 +2,7 @@
# Contributor: Grey Christoforo <first name at last name dot net>
_bcname=ShortRead
-_bcver=1.46.0
+_bcver=1.48.0
pkgname=r-${_bcname,,}
pkgver=${_bcver//[:-]/.}
pkgrel=1
@@ -11,10 +11,9 @@ arch=(i686 x86_64)
url="https://bioconductor.org/packages/release/bioc/html/${_bcname}.html"
license=(Artistic-2.0)
depends=(r 'r-biocgenerics>=0.23.3' r-biocparallel 'r-biostrings>=2.47.6' 'r-rsamtools>=1.31.2' 'r-genomicalignments>=1.15.6' r-biobase 'r-s4vectors>=0.17.25' 'r-iranges>=2.13.12' 'r-genomeinfodb>=1.15.2' 'r-genomicranges>=1.31.8' r-hwriter r-zlibbioc r-latticeextra)
-makedepends=(gcc)
optdepends=(r-biocstyle r-runit r-biomart r-genomicfeatures r-yeastnagalakshmi)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_bcname}_${_bcver}.tar.gz")
-md5sums=('1cb99240a3a440c0d28282f50b66b1a0')
+sha256sums=('69badfa1ca5c075ff29adda33d6bd71a2b62433640dcea45ae15180347439570')
build() {
cd "${srcdir}"