upgpkg: r-shortread 1.56.1-1

upstream release

2 files changed, 33 insertions, 31 deletions

diff --git a/.SRCINFO b/.SRCINFO
index adb4b38e1bd1..c36fdda56d06 100644
--- a/.SRCINFO
+++ b/.SRCINFO
@@ -1,11 +1,11 @@
 pkgbase = r-shortread
 	pkgdesc = FASTQ input and manipulation
-	pkgver = 1.54.0
+	pkgver = 1.56.1
 	pkgrel = 1
 	url = https://bioconductor.org/packages/release/bioc/html/ShortRead.html
 	arch = i686
 	arch = x86_64
-	license = Artistic-2.0
+	license = Artistic2.0
 	depends = r
 	depends = r-biobase
 	depends = r-biocgenerics>=0.23.3
@@ -16,18 +16,19 @@ pkgbase = r-shortread
 	depends = r-genomicranges>=1.31.8
 	depends = r-hwriter
 	depends = r-iranges>=2.13.12
+	depends = r-lattice
 	depends = r-latticeextra
 	depends = r-rhtslib
 	depends = r-rsamtools>=1.31.2
 	depends = r-s4vectors>=0.17.25
 	depends = r-xvector
 	depends = r-zlibbioc
+	optdepends = r-biocstyle
 	optdepends = r-biomart
 	optdepends = r-genomicfeatures
 	optdepends = r-runit
 	optdepends = r-yeastnagalakshmi
-	optdepends = r-biocstyle
-	source = https://bioconductor.org/packages/release/bioc/src/contrib/ShortRead_1.54.0.tar.gz
-	sha256sums = 18ca2c82688c158cdc952436434d4a608000ec4c02b199a0925c6cb2500a030c
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/ShortRead_1.56.1.tar.gz
+	b2sums = 89c018481902c53f76294aefc618eaa3d8fd1cf7ba01590466abde38ac9004e1f0258db32192f9efd89249e87887f4d8425f7a3d0722072e7e46882b8cbfb4de
 
 pkgname = r-shortread
diff --git a/PKGBUILD b/PKGBUILD
index a27005538a94..59b4cf8d394a 100644
--- a/PKGBUILD
+++ b/PKGBUILD
@@ -3,41 +3,42 @@
 # Contributor: Grey Christoforo <first name at last name dot net>
 
 _bcname=ShortRead
-_bcver=1.54.0
+_bcver=1.56.1
 pkgname=r-${_bcname,,}
 pkgver=${_bcver//[:-]/.}
 pkgrel=1
 pkgdesc="FASTQ input and manipulation"
 arch=(i686 x86_64)
 url="https://bioconductor.org/packages/release/bioc/html/${_bcname}.html"
-license=(Artistic-2.0)
+license=(Artistic2.0)
 depends=(
-    r
-	r-biobase
-	"r-biocgenerics>=0.23.3"
-	r-biocparallel
-	"r-biostrings>=2.47.6"
-	"r-genomeinfodb>=1.15.2"
-	"r-genomicalignments>=1.15.6"
-	"r-genomicranges>=1.31.8"
-	r-hwriter
-	"r-iranges>=2.13.12"
-	r-latticeextra
-	r-rhtslib
-	"r-rsamtools>=1.31.2"
-	"r-s4vectors>=0.17.25"
-	r-xvector
-	r-zlibbioc
+    "r"
+    "r-biobase"
+    "r-biocgenerics>=0.23.3"
+    "r-biocparallel"
+    "r-biostrings>=2.47.6"
+    "r-genomeinfodb>=1.15.2"
+    "r-genomicalignments>=1.15.6"
+    "r-genomicranges>=1.31.8"
+    "r-hwriter"
+    "r-iranges>=2.13.12"
+    "r-lattice"
+    "r-latticeextra"
+    "r-rhtslib"
+    "r-rsamtools>=1.31.2"
+    "r-s4vectors>=0.17.25"
+    "r-xvector"
+    "r-zlibbioc"
 )
 optdepends=(
-	r-biomart
-	r-genomicfeatures
-	r-runit
-	r-yeastnagalakshmi
-    r-biocstyle
+    "r-biocstyle"
+    "r-biomart"
+    "r-genomicfeatures"
+    "r-runit"
+    "r-yeastnagalakshmi"
 )
 source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_bcname}_${_bcver}.tar.gz")
-sha256sums=("18ca2c82688c158cdc952436434d4a608000ec4c02b199a0925c6cb2500a030c")
+b2sums=('89c018481902c53f76294aefc618eaa3d8fd1cf7ba01590466abde38ac9004e1f0258db32192f9efd89249e87887f4d8425f7a3d0722072e7e46882b8cbfb4de')
 
 build() {
     R CMD INSTALL ${_bcname}_${_bcver}.tar.gz -l "${srcdir}"
@@ -47,8 +48,8 @@ package() {
     install -dm0755 "${pkgdir}/usr/lib/R/library"
     cp -a --no-preserve=ownership "${_bcname}" "${pkgdir}/usr/lib/R/library"
 
-    if [[ -f "${_cranname}/LICENSE" ]]; then
-        install -Dm0644 "${_cranname}/LICENSE" "${pkgdir}/usr/share/licenses/${pkgname}/LICENSE"
+    if [[ -f "${_bcname}/LICENSE" ]]; then
+        install -Dm0644 "${_bcname}/LICENSE" "${pkgdir}/usr/share/licenses/${pkgname}/LICENSE"
     fi
 
 }