add r-siamcat

2 files changed, 100 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..9571afeb75ad
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,42 @@
+pkgbase = r-siamcat
+	pkgdesc = Statistical Inference of Associations between Microbial Communities And host phenoTypes
+	pkgver = 2.0.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/SIAMCAT
+	arch = any
+	license = GPL
+	depends = r
+	depends = r-beanplot
+	depends = r-corrplot
+	depends = r-glmnet
+	depends = r-gridbase
+	depends = r-gridextra
+	depends = r-infotheo
+	depends = r-liblinear
+	depends = r-matrixstats
+	depends = r-mlr
+	depends = r-paramhelpers
+	depends = r-phyloseq
+	depends = r-proc
+	depends = r-progress
+	depends = r-prroc
+	depends = r-rcolorbrewer
+	depends = r-scales
+	depends = r-stringr
+	depends = r-mlr3
+	depends = r-lmertest
+	depends = r-mlr3learners
+	depends = r-mlr3tuning
+	depends = r-paradox
+	depends = r-lgr
+	optdepends = r-biocstyle
+	optdepends = r-ggpubr
+	optdepends = r-knitr
+	optdepends = r-optparse
+	optdepends = r-rmarkdown
+	optdepends = r-testthat
+	optdepends = r-tidyverse
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/SIAMCAT_2.0.0.tar.gz
+	sha256sums = 6e8c33a7e95e1f80741d69434c90eab9e84e6f4e28fb0a17f530d28421d36f81
+
+pkgname = r-siamcat
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..6bf7d3a0e974
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,58 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=SIAMCAT
+_pkgver=2.0.0
+pkgname=r-${_pkgname,,}
+pkgver=2.0.0
+pkgrel=1
+pkgdesc='Statistical Inference of Associations between Microbial Communities And host phenoTypes'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('GPL')
+depends=(
+  r
+  r-beanplot
+  r-corrplot
+  r-glmnet
+  r-gridbase
+  r-gridextra
+  r-infotheo
+  r-liblinear
+  r-matrixstats
+  r-mlr
+  r-paramhelpers
+  r-phyloseq
+  r-proc
+  r-progress
+  r-prroc
+  r-rcolorbrewer
+  r-scales
+  r-stringr
+  r-mlr3
+  r-lmertest
+  r-mlr3learners
+  r-mlr3tuning
+  r-paradox
+  r-lgr
+)
+optdepends=(
+  r-biocstyle
+  r-ggpubr
+  r-knitr
+  r-optparse
+  r-rmarkdown
+  r-testthat
+  r-tidyverse
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('6e8c33a7e95e1f80741d69434c90eab9e84e6f4e28fb0a17f530d28421d36f81')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: