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| author | Sukanka | 2022-06-06 23:06:53 +0800 |
|---|---|---|
| committer | Sukanka | 2022-06-06 23:06:53 +0800 |
| commit | 72ffc8773852e1b62b98332be10ba0c9f95d0423 (patch) | |
| tree | 1dcfb953f214a3b4cff2557abe14aef16c17ee49 | |
| download | aur-72ffc8773852e1b62b98332be10ba0c9f95d0423.tar.gz | |
add r-signer
| -rw-r--r-- | .SRCINFO | 27 | ||||
| -rw-r--r-- | PKGBUILD | 44 |
2 files changed, 71 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO new file mode 100644 index 000000000000..516eec023eba --- /dev/null +++ b/.SRCINFO @@ -0,0 +1,27 @@ +pkgbase = r-signer + pkgdesc = Empirical Bayesian approach to mutational signature discovery + pkgver = 1.22.0 + pkgrel = 1 + url = https://bioconductor.org/packages/signeR + arch = x86_64 + license = GPL + depends = r + depends = r-biocgenerics + depends = r-biostrings + depends = r-genomeinfodb + depends = r-genomicranges + depends = r-iranges + depends = r-nloptr + depends = r-nmf + depends = r-pmcmrplus + depends = r-rcpp + depends = r-rcpparmadillo + depends = r-variantannotation + depends = gcc + optdepends = r-bsgenome.hsapiens.ucsc.hg19 + optdepends = r-knitr + optdepends = r-rtracklayer + source = https://bioconductor.org/packages/release/bioc/src/contrib/signeR_1.22.0.tar.gz + sha256sums = f55f0220fbee63db4438682a16d526bd070bfc7c4f5c663965c2900b92035b8e + +pkgname = r-signer diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..2bf5afbde658 --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,44 @@ +# system requirements: C++11 +# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> + +_pkgname=signeR +_pkgver=1.22.0 +pkgname=r-${_pkgname,,} +pkgver=1.22.0 +pkgrel=1 +pkgdesc='Empirical Bayesian approach to mutational signature discovery' +arch=('x86_64') +url="https://bioconductor.org/packages/${_pkgname}" +license=('GPL') +depends=( + r + r-biocgenerics + r-biostrings + r-genomeinfodb + r-genomicranges + r-iranges + r-nloptr + r-nmf + r-pmcmrplus + r-rcpp + r-rcpparmadillo + r-variantannotation + gcc +) +optdepends=( + r-bsgenome.hsapiens.ucsc.hg19 + r-knitr + r-rtracklayer +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +sha256sums=('f55f0220fbee63db4438682a16d526bd070bfc7c4f5c663965c2900b92035b8e') + +build() { + R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" +} + +package() { + install -dm0755 "${pkgdir}/usr/lib/R/library" + cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" +} +# vim:set ts=2 sw=2 et: |