[lilac] updated to 2.0.0-1

2 files changed, 88 insertions, 10 deletions

diff --git a/.SRCINFO b/.SRCINFO
index 516eec023eba..889308867644 100644
--- a/.SRCINFO
+++ b/.SRCINFO
@@ -1,27 +1,66 @@
 pkgbase = r-signer
 	pkgdesc = Empirical Bayesian approach to mutational signature discovery
-	pkgver = 1.22.0
+	pkgver = 2.0.0
 	pkgrel = 1
 	url = https://bioconductor.org/packages/signeR
 	arch = x86_64
 	license = GPL
+	depends = gcc
 	depends = r
+	depends = r-ada
+	depends = r-biocfilecache
 	depends = r-biocgenerics
 	depends = r-biostrings
+	depends = r-bsgenome
+	depends = r-bsplus
+	depends = r-clue
+	depends = r-cowplot
+	depends = r-dplyr
+	depends = r-dt
+	depends = r-e1071
+	depends = r-future
+	depends = r-future.apply
 	depends = r-genomeinfodb
 	depends = r-genomicranges
+	depends = r-ggplot2
+	depends = r-ggpubr
+	depends = r-glmnet
 	depends = r-iranges
+	depends = r-kknn
+	depends = r-listenv
+	depends = r-magrittr
+	depends = r-maxstat
 	depends = r-nloptr
 	depends = r-nmf
+	depends = r-pheatmap
 	depends = r-pmcmrplus
+	depends = r-ppclust
+	depends = r-proc
+	depends = r-proxy
+	depends = r-pvclust
+	depends = r-randomforest
+	depends = r-rcolorbrewer
 	depends = r-rcpp
 	depends = r-rcpparmadillo
+	depends = r-readr
+	depends = r-reshape2
+	depends = r-rtracklayer
+	depends = r-scales
+	depends = r-shiny
+	depends = r-shinycssloaders
+	depends = r-shinydashboard
+	depends = r-shinywidgets
+	depends = r-survivalanalysis
+	depends = r-survminer
+	depends = r-tibble
+	depends = r-tidyr
 	depends = r-variantannotation
-	depends = gcc
+	depends = r-vgam
 	optdepends = r-bsgenome.hsapiens.ucsc.hg19
+	optdepends = r-bsgenome.hsapiens.ucsc.hg38
 	optdepends = r-knitr
-	optdepends = r-rtracklayer
-	source = https://bioconductor.org/packages/release/bioc/src/contrib/signeR_1.22.0.tar.gz
-	sha256sums = f55f0220fbee63db4438682a16d526bd070bfc7c4f5c663965c2900b92035b8e
+	optdepends = r-rmarkdown
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/signeR_2.0.0.tar.gz
+	sha256sums = 850562472de73ef3791abd5afab5ada0bc4c02d7b8b77096aabd04d60f66cf5f
 
 pkgname = r-signer
diff --git a/PKGBUILD b/PKGBUILD
index 2bf5afbde658..890bb9305d07 100644
--- a/PKGBUILD
+++ b/PKGBUILD
@@ -2,36 +2,75 @@
 # Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
 
 _pkgname=signeR
-_pkgver=1.22.0
+_pkgver=2.0.0
 pkgname=r-${_pkgname,,}
-pkgver=1.22.0
+pkgver=2.0.0
 pkgrel=1
 pkgdesc='Empirical Bayesian approach to mutational signature discovery'
 arch=('x86_64')
 url="https://bioconductor.org/packages/${_pkgname}"
 license=('GPL')
 depends=(
+  gcc
   r
+  r-ada
+  r-biocfilecache
   r-biocgenerics
   r-biostrings
+  r-bsgenome
+  r-bsplus
+  r-clue
+  r-cowplot
+  r-dplyr
+  r-dt
+  r-e1071
+  r-future
+  r-future.apply
   r-genomeinfodb
   r-genomicranges
+  r-ggplot2
+  r-ggpubr
+  r-glmnet
   r-iranges
+  r-kknn
+  r-listenv
+  r-magrittr
+  r-maxstat
   r-nloptr
   r-nmf
+  r-pheatmap
   r-pmcmrplus
+  r-ppclust
+  r-proc
+  r-proxy
+  r-pvclust
+  r-randomforest
+  r-rcolorbrewer
   r-rcpp
   r-rcpparmadillo
+  r-readr
+  r-reshape2
+  r-rtracklayer
+  r-scales
+  r-shiny
+  r-shinycssloaders
+  r-shinydashboard
+  r-shinywidgets
+  r-survivalanalysis
+  r-survminer
+  r-tibble
+  r-tidyr
   r-variantannotation
-  gcc
+  r-vgam
 )
 optdepends=(
   r-bsgenome.hsapiens.ucsc.hg19
+  r-bsgenome.hsapiens.ucsc.hg38
   r-knitr
-  r-rtracklayer
+  r-rmarkdown
 )
 source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
-sha256sums=('f55f0220fbee63db4438682a16d526bd070bfc7c4f5c663965c2900b92035b8e')
+sha256sums=('850562472de73ef3791abd5afab5ada0bc4c02d7b8b77096aabd04d60f66cf5f')
 
 build() {
   R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"