add r-simffpe

2 files changed, 58 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..941212ed96e1
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,21 @@
+pkgbase = r-simffpe
+	pkgdesc = NGS Read Simulator for FFPE Tissue
+	pkgver = 1.8.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/SimFFPE
+	arch = any
+	license = LGPL
+	depends = r
+	depends = r-biostrings
+	depends = r-doparallel
+	depends = r-dplyr
+	depends = r-foreach
+	depends = r-genomicranges
+	depends = r-iranges
+	depends = r-rsamtools
+	depends = r-truncnorm
+	optdepends = r-biocstyle
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/SimFFPE_1.8.0.tar.gz
+	sha256sums = f2ed8719b4625dc89726d404c086473a2fc4ee26a842293d70124ab512814a44
+
+pkgname = r-simffpe
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..3f5209d5158e
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,37 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=SimFFPE
+_pkgver=1.8.0
+pkgname=r-${_pkgname,,}
+pkgver=1.8.0
+pkgrel=1
+pkgdesc='NGS Read Simulator for FFPE Tissue'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('LGPL')
+depends=(
+  r
+  r-biostrings
+  r-doparallel
+  r-dplyr
+  r-foreach
+  r-genomicranges
+  r-iranges
+  r-rsamtools
+  r-truncnorm
+)
+optdepends=(
+  r-biocstyle
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('f2ed8719b4625dc89726d404c086473a2fc4ee26a842293d70124ab512814a44')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: