add r-slingshot

2 files changed, 78 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..6a6378485f93
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,31 @@
+pkgbase = r-slingshot
+	pkgdesc = Tools for ordering single-cell sequencing
+	pkgver = 2.4.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/slingshot
+	arch = any
+	license = Artistic2.0
+	depends = r
+	depends = r-igraph
+	depends = r-matrixstats
+	depends = r-princurve
+	depends = r-s4vectors
+	depends = r-singlecellexperiment
+	depends = r-summarizedexperiment
+	depends = r-trajectoryutils
+	optdepends = r-biocgenerics
+	optdepends = r-biocstyle
+	optdepends = r-clusterexperiment
+	optdepends = r-covr
+	optdepends = r-knitr
+	optdepends = r-mclust
+	optdepends = r-mgcv
+	optdepends = r-rcolorbrewer
+	optdepends = r-rgl
+	optdepends = r-rmarkdown
+	optdepends = r-testthat
+	optdepends = r-uwot
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/slingshot_2.4.0.tar.gz
+	sha256sums = e226836f2238af2d390546e59e8fc4d71aaa24c392b9a12d6e58fc428d895775
+
+pkgname = r-slingshot
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..1f9478981fa3
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,47 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=slingshot
+_pkgver=2.4.0
+pkgname=r-${_pkgname,,}
+pkgver=2.4.0
+pkgrel=1
+pkgdesc='Tools for ordering single-cell sequencing'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('Artistic2.0')
+depends=(
+  r
+  r-igraph
+  r-matrixstats
+  r-princurve
+  r-s4vectors
+  r-singlecellexperiment
+  r-summarizedexperiment
+  r-trajectoryutils
+)
+optdepends=(
+  r-biocgenerics
+  r-biocstyle
+  r-clusterexperiment
+  r-covr
+  r-knitr
+  r-mclust
+  r-mgcv
+  r-rcolorbrewer
+  r-rgl
+  r-rmarkdown
+  r-testthat
+  r-uwot
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('e226836f2238af2d390546e59e8fc4d71aaa24c392b9a12d6e58fc428d895775')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: