Version 1.2.0

2 files changed, 81 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..3cb01ed0831c
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,29 @@
+pkgbase = r-speckle
+	pkgdesc = Statistical methods for analysing single cell RNA-seq data
+	pkgver = 1.2.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/speckle
+	arch = any
+	license = GPL3
+	checkdepends = r-testthat
+	checkdepends = r-vdiffr
+	depends = r-edger
+	depends = r-ggplot2
+	depends = r-limma
+	depends = r-seurat
+	depends = r-singlecellexperiment
+	optdepends = r-biocstyle
+	optdepends = r-cellbench
+	optdepends = r-jsonlite
+	optdepends = r-knitr
+	optdepends = r-patchwork
+	optdepends = r-rmarkdown
+	optdepends = r-scater
+	optdepends = r-statmod
+	optdepends = r-testthat
+	optdepends = r-vdiffr
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/speckle_1.2.0.tar.gz
+	md5sums = 4603cad300c83d6e6374e5989b5fe32a
+	sha256sums = 7ab4b4cc704042e0f505c3545bc1add88aabec7a63abd947350fd896f593b7df
+
+pkgname = r-speckle
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..dfaf6a5f161d
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,52 @@
+# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
+
+_pkgname=speckle
+_pkgver=1.2.0
+pkgname=r-${_pkgname,,}
+pkgver=${_pkgver//-/.}
+pkgrel=1
+pkgdesc="Statistical methods for analysing single cell RNA-seq data"
+arch=(any)
+url="https://bioconductor.org/packages/${_pkgname}"
+license=(GPL3)
+depends=(
+  r-edger
+  r-ggplot2
+  r-limma
+  r-seurat
+  r-singlecellexperiment
+)
+checkdepends=(
+  r-testthat
+  r-vdiffr
+)
+optdepends=(
+  r-biocstyle
+  r-cellbench
+  r-jsonlite
+  r-knitr
+  r-patchwork
+  r-rmarkdown
+  r-scater
+  r-statmod
+  r-testthat
+  r-vdiffr
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+md5sums=('4603cad300c83d6e6374e5989b5fe32a')
+sha256sums=('7ab4b4cc704042e0f505c3545bc1add88aabec7a63abd947350fd896f593b7df')
+
+build() {
+  mkdir -p build
+  R CMD INSTALL "$_pkgname" -l build
+}
+
+check() {
+  cd "$_pkgname/tests"
+  R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
+}
+
+package() {
+  install -d "$pkgdir/usr/lib/R/library"
+  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
+}