add r-splatter

2 files changed, 126 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..f128cfcbe0e4
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,55 @@
+pkgbase = r-splatter
+	pkgdesc = Simple Simulation of Single-cell RNA Sequencing Data
+	pkgver = 1.20.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/splatter
+	arch = any
+	license = GPL
+	depends = r
+	depends = r-biocgenerics
+	depends = r-biocparallel
+	depends = r-checkmate
+	depends = r-crayon
+	depends = r-edger
+	depends = r-fitdistrplus
+	depends = r-ggplot2
+	depends = r-locfit
+	depends = r-matrixstats
+	depends = r-s4vectors
+	depends = r-scales
+	depends = r-scater
+	depends = r-singlecellexperiment
+	depends = r-summarizedexperiment
+	optdepends = r-basics
+	optdepends = r-biocmanager
+	optdepends = r-biocsingular
+	optdepends = r-biocstyle
+	optdepends = r-biostrings
+	optdepends = r-covr
+	optdepends = r-cowplot
+	optdepends = r-genomeinfodb
+	optdepends = r-genomicranges
+	optdepends = r-igraph
+	optdepends = r-iranges
+	optdepends = r-knitr
+	optdepends = r-limsolve
+	optdepends = r-lme4
+	optdepends = r-magick
+	optdepends = r-mfa
+	optdepends = r-phenopath
+	optdepends = r-preprocesscore
+	optdepends = r-progress
+	optdepends = r-pscl
+	optdepends = r-rmarkdown
+	optdepends = r-scdd
+	optdepends = r-scran
+	optdepends = r-scuttle
+	optdepends = r-sparsedc
+	optdepends = r-spelling
+	optdepends = r-testthat
+	optdepends = r-variantannotation
+	optdepends = r-zinbwave
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/splatter_1.20.0.tar.gz
+	sha256sums = 0eaf0ef914c0a8fdffe6ddaff6dc98441a4a9016fb26972cd03faaae65e005ae
+
+pkgname = r-splatter
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..27a0f3a733a3
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,71 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=splatter
+_pkgver=1.20.0
+pkgname=r-${_pkgname,,}
+pkgver=1.20.0
+pkgrel=1
+pkgdesc='Simple Simulation of Single-cell RNA Sequencing Data'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('GPL')
+depends=(
+  r
+  r-biocgenerics
+  r-biocparallel
+  r-checkmate
+  r-crayon
+  r-edger
+  r-fitdistrplus
+  r-ggplot2
+  r-locfit
+  r-matrixstats
+  r-s4vectors
+  r-scales
+  r-scater
+  r-singlecellexperiment
+  r-summarizedexperiment
+)
+optdepends=(
+  r-basics
+  r-biocmanager
+  r-biocsingular
+  r-biocstyle
+  r-biostrings
+  r-covr
+  r-cowplot
+  r-genomeinfodb
+  r-genomicranges
+  r-igraph
+  r-iranges
+  r-knitr
+  r-limsolve
+  r-lme4
+  r-magick
+  r-mfa
+  r-phenopath
+  r-preprocesscore
+  r-progress
+  r-pscl
+  r-rmarkdown
+  r-scdd
+  r-scran
+  r-scuttle
+  r-sparsedc
+  r-spelling
+  r-testthat
+  r-variantannotation
+  r-zinbwave
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('0eaf0ef914c0a8fdffe6ddaff6dc98441a4a9016fb26972cd03faaae65e005ae')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: