Version 1.6.7

2 files changed, 125 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..7fd9583a0b3f
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,51 @@
+pkgbase = r-spotlight
+	pkgdesc = `SPOTlight`: Spatial Transcriptomics Deconvolution
+	pkgver = 1.6.7
+	pkgrel = 1
+	url = https://bioconductor.org/packages/SPOTlight
+	arch = any
+	license = GPL-3.0-only
+	checkdepends = r-dropletutils
+	checkdepends = r-experimenthub
+	checkdepends = r-ggcorrplot
+	checkdepends = r-igraph
+	checkdepends = r-jpeg
+	checkdepends = r-png
+	checkdepends = r-scatterpie
+	checkdepends = r-seuratobject
+	checkdepends = r-spatialexperiment
+	checkdepends = r-tenxvisiumdata
+	checkdepends = r-testthat
+	depends = r-ggplot2
+	depends = r-matrixstats
+	depends = r-nmf
+	depends = r-nnls
+	depends = r-singlecellexperiment
+	depends = r-sparsematrixstats
+	optdepends = r-biocstyle
+	optdepends = r-colorblindness
+	optdepends = r-delayedarray
+	optdepends = r-dropletutils
+	optdepends = r-experimenthub
+	optdepends = r-ggcorrplot
+	optdepends = r-igraph
+	optdepends = r-jpeg
+	optdepends = r-knitr
+	optdepends = r-png
+	optdepends = r-rmarkdown
+	optdepends = r-s4vectors
+	optdepends = r-scater
+	optdepends = r-scatterpie
+	optdepends = r-scran
+	optdepends = r-seurat
+	optdepends = r-seuratobject
+	optdepends = r-spatialexperiment
+	optdepends = r-summarizedexperiment
+	optdepends = r-tabulamurissenisdata
+	optdepends = r-tenxvisiumdata
+	optdepends = r-testthat
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/SPOTlight_1.6.7.tar.gz
+	md5sums = 0362e0be411e3ed3ce5bf9b928439e10
+	b2sums = 1ea3f06da6af3f44a60c4542032540f72c65304cbce72b1f8132394338ff3d54901989e9bb6027a71a79be292bdcb5252d2dea3ea9a7fa9bddafc8d654828497
+
+pkgname = r-spotlight
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..65dfc3611e3a
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,74 @@
+# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
+
+_pkgname=SPOTlight
+_pkgver=1.6.7
+pkgname=r-${_pkgname,,}
+pkgver=${_pkgver//-/.}
+pkgrel=1
+pkgdesc="\`SPOTlight\`: Spatial Transcriptomics Deconvolution"
+arch=(any)
+url="https://bioconductor.org/packages/$_pkgname"
+license=('GPL-3.0-only')
+depends=(
+  r-ggplot2
+  r-matrixstats
+  r-nmf
+  r-nnls
+  r-singlecellexperiment
+  r-sparsematrixstats
+)
+checkdepends=(
+  r-dropletutils
+  r-experimenthub
+  r-ggcorrplot
+  r-igraph
+  r-jpeg
+  r-png
+  r-scatterpie
+  r-seuratobject
+  r-spatialexperiment
+  r-tenxvisiumdata
+  r-testthat
+)
+optdepends=(
+  r-biocstyle
+  r-colorblindness
+  r-delayedarray
+  r-dropletutils
+  r-experimenthub
+  r-ggcorrplot
+  r-igraph
+  r-jpeg
+  r-knitr
+  r-png
+  r-rmarkdown
+  r-s4vectors
+  r-scater
+  r-scatterpie
+  r-scran
+  r-seurat
+  r-seuratobject
+  r-spatialexperiment
+  r-summarizedexperiment
+  r-tabulamurissenisdata
+  r-tenxvisiumdata
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+md5sums=('0362e0be411e3ed3ce5bf9b928439e10')
+b2sums=('1ea3f06da6af3f44a60c4542032540f72c65304cbce72b1f8132394338ff3d54901989e9bb6027a71a79be292bdcb5252d2dea3ea9a7fa9bddafc8d654828497')
+
+build() {
+  mkdir build
+  R CMD INSTALL -l build "$_pkgname"
+}
+
+check() {
+  cd "$_pkgname/tests"
+  R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
+}
+
+package() {
+  install -d "$pkgdir/usr/lib/R/library"
+  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
+}