upgpkg: r-summarizedexperiment 1.26.0-1

upstream release

upstream release

2 files changed, 47 insertions, 20 deletions

diff --git a/.SRCINFO b/.SRCINFO
index a350fd6837b6..0378109f454c 100644
--- a/.SRCINFO
+++ b/.SRCINFO
@@ -1,35 +1,35 @@
 pkgbase = r-summarizedexperiment
 	pkgdesc = SummarizedExperiment container
-	pkgver = 1.24.0
+	pkgver = 1.26.0
 	pkgrel = 1
 	url = https://bioconductor.org/packages/release/bioc/html/SummarizedExperiment.html
 	arch = any
 	license = Artistic-2.0
 	depends = r>=4.0.0
-	depends = r-matrixgenerics>=1.1.3
-	depends = r-genomicranges>=1.41.5
 	depends = r-biobase
 	depends = r-biocgenerics>=0.37.0
-	depends = r-s4vectors>=0.27.12
-	depends = r-iranges>=2.23.9
-	depends = r-genomeinfodb>=1.13.1
 	depends = r-delayedarray>=0.15.10
-	optdepends = r-hdf5array
+	depends = r-genomeinfodb>=1.13.1
+	depends = r-genomicranges>=1.41.5
+	depends = r-iranges>=2.23.9
+	depends = r-matrixgenerics>=1.1.3
+	depends = r-s4vectors>=0.27.12
+	optdepends = r-airway>=1.15.1
 	optdepends = r-annotate
 	optdepends = r-annotationdbi
-	optdepends = r-hgu95av2.db
+	optdepends = r-biocstyle
+	optdepends = r-digest
 	optdepends = r-genomicfeatures
-	optdepends = r-txdb.hsapiens.ucsc.hg19.knowngene
+	optdepends = r-hdf5array>=1.7.5
+	optdepends = r-hgu95av2.db
 	optdepends = r-jsonlite
-	optdepends = r-rhdf5
-	optdepends = r-airway
-	optdepends = r-biocstyle
 	optdepends = r-knitr
+	optdepends = r-rhdf5
 	optdepends = r-rmarkdown
 	optdepends = r-runit
 	optdepends = r-testthat
-	optdepends = r-digest
-	source = https://bioconductor.org/packages/release/bioc/src/contrib/SummarizedExperiment_1.24.0.tar.gz
-	sha256sums = aa8864655e3a0efdbcdd6554282126112eedcf91a52b70993b7aa71895e8f662
+	optdepends = r-txdb.hsapiens.ucsc.hg19.knowngene
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/SummarizedExperiment_1.26.0.tar.gz
+	sha256sums = fe0fa302356ce22204f0320f1ffb181525354aac87c7c8c6604fb61f44550e10
 
 pkgname = r-summarizedexperiment
diff --git a/PKGBUILD b/PKGBUILD
index dcdce23148e5..d42e306ba0f6 100644
--- a/PKGBUILD
+++ b/PKGBUILD
@@ -1,19 +1,46 @@
+# Maintainer: peippo <christoph+aur@christophfink.com>
 # Contributor: Viktor Drobot (aka dviktor) linux776 [at] gmail [dot] com
 # Contributor: Grey Christoforo <first name at last name dot net>
 
 _bcname=SummarizedExperiment
-_bcver=1.24.0
+_bcver=1.26.0
 pkgname=r-${_bcname,,}
 pkgver=${_bcver//[:-]/.}
 pkgrel=1
 pkgdesc="SummarizedExperiment container"
 arch=(any)
 url="https://bioconductor.org/packages/release/bioc/html/${_bcname}.html"
-license=(Artistic-2.0)
-depends=('r>=4.0.0' 'r-matrixgenerics>=1.1.3' 'r-genomicranges>=1.41.5' r-biobase 'r-biocgenerics>=0.37.0' 'r-s4vectors>=0.27.12' 'r-iranges>=2.23.9' 'r-genomeinfodb>=1.13.1' 'r-delayedarray>=0.15.10')
-optdepends=(r-hdf5array r-annotate r-annotationdbi r-hgu95av2.db r-genomicfeatures r-txdb.hsapiens.ucsc.hg19.knowngene r-jsonlite r-rhdf5 r-airway r-biocstyle r-knitr r-rmarkdown r-runit r-testthat r-digest)
+license=("Artistic-2.0")
+depends=(
+    "r>=4.0.0"
+    r-biobase
+	"r-biocgenerics>=0.37.0"
+	"r-delayedarray>=0.15.10"
+	"r-genomeinfodb>=1.13.1"
+	"r-genomicranges>=1.41.5"
+	"r-iranges>=2.23.9"
+	"r-matrixgenerics>=1.1.3"
+	"r-s4vectors>=0.27.12"
+)
+optdepends=(
+	"r-airway>=1.15.1"
+	r-annotate
+	r-annotationdbi
+	r-biocstyle
+	r-digest
+	r-genomicfeatures
+    "r-hdf5array>=1.7.5"
+	r-hgu95av2.db
+	r-jsonlite
+	r-knitr
+	r-rhdf5
+	r-rmarkdown
+	r-runit
+	r-testthat
+	r-txdb.hsapiens.ucsc.hg19.knowngene
+)
 source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_bcname}_${_bcver}.tar.gz")
-sha256sums=('aa8864655e3a0efdbcdd6554282126112eedcf91a52b70993b7aa71895e8f662')
+sha256sums=("fe0fa302356ce22204f0320f1ffb181525354aac87c7c8c6604fb61f44550e10")
 
 build() {
   R CMD INSTALL ${_bcname}_${_bcver}.tar.gz -l "${srcdir}"