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authorViktor Drobot2020-10-30 23:01:24 +0300
committerViktor Drobot2020-10-30 23:01:24 +0300
commitb36604b71133b8150b91f473468e9895232420dc (patch)
treef78492b4cad12822e17631345ee12726a5d2f0fc
parent6b8cda1e401e4ddf7b53822669ff43c477a554d0 (diff)
downloadaur-b36604b71133b8150b91f473468e9895232420dc.tar.gz
Update
-rw-r--r--.SRCINFO25
-rw-r--r--PKGBUILD8
2 files changed, 17 insertions, 16 deletions
diff --git a/.SRCINFO b/.SRCINFO
index 18ca3ad828d1..e70d9401999e 100644
--- a/.SRCINFO
+++ b/.SRCINFO
@@ -1,35 +1,36 @@
pkgbase = r-summarizedexperiment
pkgdesc = SummarizedExperiment container
- pkgver = 1.18.2
+ pkgver = 1.20.0
pkgrel = 1
url = https://bioconductor.org/packages/release/bioc/html/SummarizedExperiment.html
arch = any
license = Artistic-2.0
depends = r>=3.2
- depends = r-genomicranges>=1.33.6
+ depends = r-matrixgenerics>=1.1.3
+ depends = r-genomicranges>=1.41.5
depends = r-biobase
- depends = r-delayedarray>=0.3.20
depends = r-biocgenerics>=0.15.3
- depends = r-s4vectors>=0.25.14
- depends = r-iranges>=2.21.6
+ depends = r-s4vectors>=0.27.12
+ depends = r-iranges>=2.23.9
depends = r-genomeinfodb>=1.13.1
+ depends = r-delayedarray>=0.15.10
+ optdepends = r-hdf5array
optdepends = r-annotate
optdepends = r-annotationdbi
optdepends = r-hgu95av2.db
optdepends = r-genomicfeatures
optdepends = r-txdb.hsapiens.ucsc.hg19.knowngene
- optdepends = r-biocstyle
- optdepends = r-knitr
- optdepends = r-rmarkdown
- optdepends = r-digest
optdepends = r-jsonlite
optdepends = r-rhdf5
- optdepends = r-hdf5array
optdepends = r-airway
+ optdepends = r-biocstyle
+ optdepends = r-knitr
+ optdepends = r-rmarkdown
optdepends = r-runit
optdepends = r-testthat
- source = https://bioconductor.org/packages/release/bioc/src/contrib/SummarizedExperiment_1.18.2.tar.gz
- md5sums = aa68ba5e3ef706d9d3d42627c25a313a
+ optdepends = r-digest
+ source = https://bioconductor.org/packages/release/bioc/src/contrib/SummarizedExperiment_1.20.0.tar.gz
+ sha256sums = fa864028b2231d7aa1027be71407981f69373613d3b83ae9337f5bcd2a69a613
pkgname = r-summarizedexperiment
diff --git a/PKGBUILD b/PKGBUILD
index 25cf7effe1ae..d89d2fd0c738 100644
--- a/PKGBUILD
+++ b/PKGBUILD
@@ -2,7 +2,7 @@
# Contributor: Grey Christoforo <first name at last name dot net>
_bcname=SummarizedExperiment
-_bcver=1.18.2
+_bcver=1.20.0
pkgname=r-${_bcname,,}
pkgver=${_bcver//[:-]/.}
pkgrel=1
@@ -10,10 +10,10 @@ pkgdesc="SummarizedExperiment container"
arch=(any)
url="https://bioconductor.org/packages/release/bioc/html/${_bcname}.html"
license=(Artistic-2.0)
-depends=('r>=3.2' 'r-genomicranges>=1.33.6' r-biobase 'r-delayedarray>=0.3.20' 'r-biocgenerics>=0.15.3' 'r-s4vectors>=0.25.14' 'r-iranges>=2.21.6' 'r-genomeinfodb>=1.13.1')
-optdepends=(r-annotate r-annotationdbi r-hgu95av2.db r-genomicfeatures r-txdb.hsapiens.ucsc.hg19.knowngene r-biocstyle r-knitr r-rmarkdown r-digest r-jsonlite r-rhdf5 r-hdf5array r-airway r-runit r-testthat)
+depends=('r>=3.2' 'r-matrixgenerics>=1.1.3' 'r-genomicranges>=1.41.5' r-biobase 'r-biocgenerics>=0.15.3' 'r-s4vectors>=0.27.12' 'r-iranges>=2.23.9' 'r-genomeinfodb>=1.13.1' 'r-delayedarray>=0.15.10')
+optdepends=(r-hdf5array r-annotate r-annotationdbi r-hgu95av2.db r-genomicfeatures r-txdb.hsapiens.ucsc.hg19.knowngene r-jsonlite r-rhdf5 r-airway r-biocstyle r-knitr r-rmarkdown r-runit r-testthat r-digest)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_bcname}_${_bcver}.tar.gz")
-md5sums=('aa68ba5e3ef706d9d3d42627c25a313a')
+sha256sums=('fa864028b2231d7aa1027be71407981f69373613d3b83ae9337f5bcd2a69a613')
build() {
cd "${srcdir}"