upgpkg: r-summarizedexperiment 1.28.0-1

upstream release

2 files changed, 32 insertions, 30 deletions

diff --git a/.SRCINFO b/.SRCINFO
index 17b6c5cab4dc..1b919e3647b6 100644
--- a/.SRCINFO
+++ b/.SRCINFO
@@ -1,10 +1,10 @@
 pkgbase = r-summarizedexperiment
 	pkgdesc = SummarizedExperiment container
-	pkgver = 1.26.1
+	pkgver = 1.28.0
 	pkgrel = 1
 	url = https://bioconductor.org/packages/release/bioc/html/SummarizedExperiment.html
 	arch = any
-	license = Artistic-2.0
+	license = Artistic2.0
 	depends = r>=4.0.0
 	depends = r-biobase
 	depends = r-biocgenerics>=0.37.0
@@ -12,8 +12,9 @@ pkgbase = r-summarizedexperiment
 	depends = r-genomeinfodb>=1.13.1
 	depends = r-genomicranges>=1.41.5
 	depends = r-iranges>=2.23.9
+	depends = r-matrix
 	depends = r-matrixgenerics>=1.1.3
-	depends = r-s4vectors>=0.27.12
+	depends = r-s4vectors>=0.33.7
 	optdepends = r-airway>=1.15.1
 	optdepends = r-annotate
 	optdepends = r-annotationdbi
@@ -29,7 +30,7 @@ pkgbase = r-summarizedexperiment
 	optdepends = r-runit
 	optdepends = r-testthat
 	optdepends = r-txdb.hsapiens.ucsc.hg19.knowngene
-	source = https://bioconductor.org/packages/release/bioc/src/contrib/SummarizedExperiment_1.26.1.tar.gz
-	sha256sums = 697c5faf7620dbb336591463bcb027d45a297197ed012a13d0327aaaebc7740b
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/SummarizedExperiment_1.28.0.tar.gz
+	b2sums = 444fcef2d5f510aed7f3f0f9f8b4f0155d92974928f2c4150329be471d855b8915c61fcaa1af6804e425e58219213673bc71772519fcd79a737d93330d9b2557
 
 pkgname = r-summarizedexperiment
diff --git a/PKGBUILD b/PKGBUILD
index 10259ed47108..030c081fa9ce 100644
--- a/PKGBUILD
+++ b/PKGBUILD
@@ -3,44 +3,45 @@
 # Contributor: Grey Christoforo <first name at last name dot net>
 
 _bcname=SummarizedExperiment
-_bcver=1.26.1
+_bcver=1.28.0
 pkgname=r-${_bcname,,}
 pkgver=${_bcver//[:-]/.}
 pkgrel=1
 pkgdesc="SummarizedExperiment container"
 arch=(any)
 url="https://bioconductor.org/packages/release/bioc/html/${_bcname}.html"
-license=("Artistic-2.0")
+license=("Artistic2.0")
 depends=(
     "r>=4.0.0"
-    r-biobase
-	"r-biocgenerics>=0.37.0"
-	"r-delayedarray>=0.15.10"
-	"r-genomeinfodb>=1.13.1"
-	"r-genomicranges>=1.41.5"
-	"r-iranges>=2.23.9"
-	"r-matrixgenerics>=1.1.3"
-	"r-s4vectors>=0.27.12"
+    "r-biobase"
+    "r-biocgenerics>=0.37.0"
+    "r-delayedarray>=0.15.10"
+    "r-genomeinfodb>=1.13.1"
+    "r-genomicranges>=1.41.5"
+    "r-iranges>=2.23.9"
+    "r-matrix"
+    "r-matrixgenerics>=1.1.3"
+    "r-s4vectors>=0.33.7"
 )
 optdepends=(
-	"r-airway>=1.15.1"
-	r-annotate
-	r-annotationdbi
-	r-biocstyle
-	r-digest
-	r-genomicfeatures
+    "r-airway>=1.15.1"
+    "r-annotate"
+    "r-annotationdbi"
+    "r-biocstyle"
+    "r-digest"
+    "r-genomicfeatures"
     "r-hdf5array>=1.7.5"
-	r-hgu95av2.db
-	r-jsonlite
-	r-knitr
-	r-rhdf5
-	r-rmarkdown
-	r-runit
-	r-testthat
-	r-txdb.hsapiens.ucsc.hg19.knowngene
+    "r-hgu95av2.db"
+    "r-jsonlite"
+    "r-knitr"
+    "r-rhdf5"
+    "r-rmarkdown"
+    "r-runit"
+    "r-testthat"
+    "r-txdb.hsapiens.ucsc.hg19.knowngene"
 )
 source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_bcname}_${_bcver}.tar.gz")
-sha256sums=("697c5faf7620dbb336591463bcb027d45a297197ed012a13d0327aaaebc7740b")
+b2sums=('444fcef2d5f510aed7f3f0f9f8b4f0155d92974928f2c4150329be471d855b8915c61fcaa1af6804e425e58219213673bc71772519fcd79a737d93330d9b2557')
 
 build() {
   R CMD INSTALL ${_bcname}_${_bcver}.tar.gz -l "${srcdir}"