add r-survtype

2 files changed, 56 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..ff86b7df9a0a
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,20 @@
+pkgbase = r-survtype
+	pkgdesc = Subtype Identification with Survival Data
+	pkgver = 1.12.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/survtype
+	arch = any
+	license = Artistic2.0
+	depends = r
+	depends = r-clustvarsel
+	depends = r-pheatmap
+	depends = r-summarizedexperiment
+	depends = r-survminer
+	optdepends = r-knitr
+	optdepends = r-maftools
+	optdepends = r-rmarkdown
+	optdepends = r-scales
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/survtype_1.12.0.tar.gz
+	sha256sums = 6512aa97ab047c202ab404c1db6ae55be60cdaaf68defd2e5e930b99b4141846
+
+pkgname = r-survtype
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..4dedb3d506b3
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,36 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=survtype
+_pkgver=1.12.0
+pkgname=r-${_pkgname,,}
+pkgver=1.12.0
+pkgrel=1
+pkgdesc='Subtype Identification with Survival Data'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('Artistic2.0')
+depends=(
+  r
+  r-clustvarsel
+  r-pheatmap
+  r-summarizedexperiment
+  r-survminer
+)
+optdepends=(
+  r-knitr
+  r-maftools
+  r-rmarkdown
+  r-scales
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('6512aa97ab047c202ab404c1db6ae55be60cdaaf68defd2e5e930b99b4141846')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: