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| author | Sukanka | 2022-06-07 01:20:40 +0800 |
|---|---|---|
| committer | Sukanka | 2022-06-07 01:20:40 +0800 |
| commit | 29f280215fda9c968a3fefa4a912ea2c61e2c0ae (patch) | |
| tree | b669e7ea738fd174ccfca1e47afe4a34ae213c3f | |
| download | aur-29f280215fda9c968a3fefa4a912ea2c61e2c0ae.tar.gz | |
add r-tbsignatureprofiler
| -rw-r--r-- | .SRCINFO | 51 | ||||
| -rw-r--r-- | PKGBUILD | 68 |
2 files changed, 119 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO new file mode 100644 index 000000000000..6904b9edeb54 --- /dev/null +++ b/.SRCINFO @@ -0,0 +1,51 @@ +pkgbase = r-tbsignatureprofiler + pkgdesc = Profile RNA-Seq Data Using TB Pathway Signatures + pkgver = 1.8.0 + pkgrel = 1 + url = https://bioconductor.org/packages/TBSignatureProfiler + arch = any + license = MIT + depends = r + depends = r-assign + depends = r-biocgenerics + depends = r-biocparallel + depends = r-complexheatmap + depends = r-deseq2 + depends = r-dt + depends = r-edger + depends = r-gdata + depends = r-ggplot2 + depends = r-gsva + depends = r-magrittr + depends = r-rcolorbrewer + depends = r-reshape2 + depends = r-rlang + depends = r-rocit + depends = r-s4vectors + depends = r-singscore + depends = r-summarizedexperiment + optdepends = r-biocstyle + optdepends = r-caret + optdepends = r-circlize + optdepends = r-class + optdepends = r-covr + optdepends = r-dplyr + optdepends = r-e1071 + optdepends = r-glmnet + optdepends = r-hgnchelper + optdepends = r-impute + optdepends = r-knitr + optdepends = r-lintr + optdepends = r-mass + optdepends = r-plyr + optdepends = r-proc + optdepends = r-randomforest + optdepends = r-rmarkdown + optdepends = r-shiny + optdepends = r-spelling + optdepends = r-sva + optdepends = r-testthat + source = https://bioconductor.org/packages/release/bioc/src/contrib/TBSignatureProfiler_1.8.0.tar.gz + sha256sums = 7ace22a01a0983fca1e23290132f39dff3383f4bdf588529c1d8d4fc466eecda + +pkgname = r-tbsignatureprofiler diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..be9d1b103e0f --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,68 @@ +# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> + +_pkgname=TBSignatureProfiler +_pkgver=1.8.0 +pkgname=r-${_pkgname,,} +pkgver=1.8.0 +pkgrel=1 +pkgdesc='Profile RNA-Seq Data Using TB Pathway Signatures' +arch=('any') +url="https://bioconductor.org/packages/${_pkgname}" +license=('MIT') +depends=( + r + r-assign + r-biocgenerics + r-biocparallel + r-complexheatmap + r-deseq2 + r-dt + r-edger + r-gdata + r-ggplot2 + r-gsva + r-magrittr + r-rcolorbrewer + r-reshape2 + r-rlang + r-rocit + r-s4vectors + r-singscore + r-summarizedexperiment +) +optdepends=( + r-biocstyle + r-caret + r-circlize + r-class + r-covr + r-dplyr + r-e1071 + r-glmnet + r-hgnchelper + r-impute + r-knitr + r-lintr + r-mass + r-plyr + r-proc + r-randomforest + r-rmarkdown + r-shiny + r-spelling + r-sva + r-testthat +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +sha256sums=('7ace22a01a0983fca1e23290132f39dff3383f4bdf588529c1d8d4fc466eecda') + +build() { + R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" +} + +package() { + install -dm0755 "${pkgdir}/usr/lib/R/library" + cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" + install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}" +} +# vim:set ts=2 sw=2 et: |