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author | Sukanka | 2022-06-07 01:41:17 +0800 |
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committer | Sukanka | 2022-06-07 01:41:17 +0800 |
commit | cb1a49ef427cd37bf443f0bf096c3c0137421bed (patch) | |
tree | 2dd91dc4a0e66938e071dae5fd09179f1a67d6de | |
download | aur-cb1a49ef427cd37bf443f0bf096c3c0137421bed.tar.gz |
add r-timirgen
-rw-r--r-- | .SRCINFO | 38 | ||||
-rw-r--r-- | PKGBUILD | 54 |
2 files changed, 92 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO new file mode 100644 index 000000000000..3a6f475ea171 --- /dev/null +++ b/.SRCINFO @@ -0,0 +1,38 @@ +pkgbase = r-timirgen + pkgdesc = Time sensitive microRNA-mRNA integration, analysis and network generation tool + pkgver = 1.6.0 + pkgrel = 1 + url = https://bioconductor.org/packages/TimiRGeN + arch = any + license = GPL + depends = r + depends = r-biomart + depends = r-clusterprofiler + depends = r-dplyr + depends = r-freqprof + depends = r-ggdendro + depends = r-gghighlight + depends = r-ggplot2 + depends = r-gplots + depends = r-gtools + depends = r-igraph + depends = r-mfuzz + depends = r-multiassayexperiment + depends = r-rcy3 + depends = r-readxl + depends = r-reshape2 + depends = r-rwikipathways + depends = r-scales + depends = r-stringr + depends = r-tidyr + optdepends = r-biocmanager + optdepends = r-kableextra + optdepends = r-knitr + optdepends = r-org.hs.eg.db + optdepends = r-org.mm.eg.db + optdepends = r-rmarkdown + optdepends = r-testthat + source = https://bioconductor.org/packages/release/bioc/src/contrib/TimiRGeN_1.6.0.tar.gz + sha256sums = 7eeb5dcc263ad5ff29073176a64db05ab4eddc51708c655c53cd6d34d2041af5 + +pkgname = r-timirgen diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..cb3162ed776c --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,54 @@ +# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> + +_pkgname=TimiRGeN +_pkgver=1.6.0 +pkgname=r-${_pkgname,,} +pkgver=1.6.0 +pkgrel=1 +pkgdesc='Time sensitive microRNA-mRNA integration, analysis and network generation tool' +arch=('any') +url="https://bioconductor.org/packages/${_pkgname}" +license=('GPL') +depends=( + r + r-biomart + r-clusterprofiler + r-dplyr + r-freqprof + r-ggdendro + r-gghighlight + r-ggplot2 + r-gplots + r-gtools + r-igraph + r-mfuzz + r-multiassayexperiment + r-rcy3 + r-readxl + r-reshape2 + r-rwikipathways + r-scales + r-stringr + r-tidyr +) +optdepends=( + r-biocmanager + r-kableextra + r-knitr + r-org.hs.eg.db + r-org.mm.eg.db + r-rmarkdown + r-testthat +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +sha256sums=('7eeb5dcc263ad5ff29073176a64db05ab4eddc51708c655c53cd6d34d2041af5') + +build() { + R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" +} + +package() { + install -dm0755 "${pkgdir}/usr/lib/R/library" + cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" +} +# vim:set ts=2 sw=2 et: |