add r-tnbc.cms

2 files changed, 66 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..cc5dea609125
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,25 @@
+pkgbase = r-tnbc.cms
+	pkgdesc = TNBC.CMS: Prediction of TNBC Consensus Molecular Subtypes
+	pkgver = 1.12.0
+	pkgrel = 3
+	url = https://bioconductor.org/packages/TNBC.CMS
+	arch = any
+	license = GPL
+	depends = r
+	depends = r-e1071
+	depends = r-forestplot
+	depends = r-ggally
+	depends = r-ggplot2
+	depends = r-ggpubr
+	depends = r-gsva
+	depends = r-pheatmap
+	depends = r-pracma
+	depends = r-quadprog
+	depends = r-r.utils
+	depends = r-rcolorbrewer
+	depends = r-summarizedexperiment
+	optdepends = r-knitr
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/TNBC.CMS_1.12.0.tar.gz
+	sha256sums = edc7fb0197010f52df303ffbbfc6b11c58dd5c6233af740744c9b2ebc61d848b
+
+pkgname = r-tnbc.cms
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..b2f8851bfb52
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,41 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=TNBC.CMS
+_pkgver=1.12.0
+pkgname=r-${_pkgname,,}
+pkgver=1.12.0
+pkgrel=3
+pkgdesc='TNBC.CMS: Prediction of TNBC Consensus Molecular Subtypes'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('GPL')
+depends=(
+  r
+  r-e1071
+  r-forestplot
+  r-ggally
+  r-ggplot2
+  r-ggpubr
+  r-gsva
+  r-pheatmap
+  r-pracma
+  r-quadprog
+  r-r.utils
+  r-rcolorbrewer
+  r-summarizedexperiment
+)
+optdepends=(
+  r-knitr
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('edc7fb0197010f52df303ffbbfc6b11c58dd5c6233af740744c9b2ebc61d848b')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: