add r-transite

2 files changed, 72 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..4dd8cbf7beea
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,27 @@
+pkgbase = r-transite
+	pkgdesc = RNA-binding protein motif analysis
+	pkgver = 1.14.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/transite
+	arch = x86_64
+	license = MIT
+	depends = r
+	depends = r-biocgenerics
+	depends = r-biostrings
+	depends = r-dplyr
+	depends = r-genomicranges
+	depends = r-ggplot2
+	depends = r-ggseqlogo
+	depends = r-gridextra
+	depends = r-rcpp
+	depends = r-scales
+	depends = r-tfmpvalue
+	depends = gcc
+	optdepends = r-knitr
+	optdepends = r-rmarkdown
+	optdepends = r-roxygen2
+	optdepends = r-testthat
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/transite_1.14.0.tar.gz
+	sha256sums = 568d171babee92e3ff129cc54e0bfaa77d8d9ebb693833c102bfaa40a74acd40
+
+pkgname = r-transite
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..c5ac4c14c5c1
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,45 @@
+# system requirements: C++11
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=transite
+_pkgver=1.14.0
+pkgname=r-${_pkgname,,}
+pkgver=1.14.0
+pkgrel=1
+pkgdesc='RNA-binding protein motif analysis'
+arch=('x86_64')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('MIT')
+depends=(
+  r
+  r-biocgenerics
+  r-biostrings
+  r-dplyr
+  r-genomicranges
+  r-ggplot2
+  r-ggseqlogo
+  r-gridextra
+  r-rcpp
+  r-scales
+  r-tfmpvalue
+  gcc
+)
+optdepends=(
+  r-knitr
+  r-rmarkdown
+  r-roxygen2
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('568d171babee92e3ff129cc54e0bfaa77d8d9ebb693833c102bfaa40a74acd40')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+  install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
+}
+# vim:set ts=2 sw=2 et: