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author | Sukanka | 2022-06-07 02:05:53 +0800 |
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committer | Sukanka | 2022-06-07 02:05:53 +0800 |
commit | 32d2695c7fa25de0981c4f33ed2662474df79e46 (patch) | |
tree | b15bafeed9ad4cf2bd905f1ffd76cf5b9cbaa899 | |
download | aur-32d2695c7fa25de0981c4f33ed2662474df79e46.tar.gz |
add r-trnascanimport
-rw-r--r-- | .SRCINFO | 31 | ||||
-rw-r--r-- | PKGBUILD | 47 |
2 files changed, 78 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO new file mode 100644 index 000000000000..872fe515f8b1 --- /dev/null +++ b/.SRCINFO @@ -0,0 +1,31 @@ +pkgbase = r-trnascanimport + pkgdesc = Importing a tRNAscan-SE result file as GRanges object + pkgver = 1.16.0 + pkgrel = 1 + url = https://bioconductor.org/packages/tRNAscanImport + arch = any + license = GPL + depends = r + depends = r-biocgenerics + depends = r-biostrings + depends = r-bsgenome + depends = r-genomeinfodb + depends = r-genomicranges + depends = r-iranges + depends = r-rsamtools + depends = r-rtracklayer + depends = r-s4vectors + depends = r-stringr + depends = r-structstrings + depends = r-trna + depends = r-xvector + optdepends = r-biocstyle + optdepends = r-bsgenome.scerevisiae.ucsc.saccer3 + optdepends = r-ggplot2 + optdepends = r-knitr + optdepends = r-rmarkdown + optdepends = r-testthat + source = https://bioconductor.org/packages/release/bioc/src/contrib/tRNAscanImport_1.16.0.tar.gz + sha256sums = 9e3f50736976f7131f3ac4c7fa26950eafdb010474d605be80ca9c8a8922d3fd + +pkgname = r-trnascanimport diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..575c98e638be --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,47 @@ +# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> + +_pkgname=tRNAscanImport +_pkgver=1.16.0 +pkgname=r-${_pkgname,,} +pkgver=1.16.0 +pkgrel=1 +pkgdesc='Importing a tRNAscan-SE result file as GRanges object' +arch=('any') +url="https://bioconductor.org/packages/${_pkgname}" +license=('GPL') +depends=( + r + r-biocgenerics + r-biostrings + r-bsgenome + r-genomeinfodb + r-genomicranges + r-iranges + r-rsamtools + r-rtracklayer + r-s4vectors + r-stringr + r-structstrings + r-trna + r-xvector +) +optdepends=( + r-biocstyle + r-bsgenome.scerevisiae.ucsc.saccer3 + r-ggplot2 + r-knitr + r-rmarkdown + r-testthat +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +sha256sums=('9e3f50736976f7131f3ac4c7fa26950eafdb010474d605be80ca9c8a8922d3fd') + +build() { + R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" +} + +package() { + install -dm0755 "${pkgdir}/usr/lib/R/library" + cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" +} +# vim:set ts=2 sw=2 et: |