add r-tvtb

2 files changed, 96 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..65794742fb21
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,40 @@
+pkgbase = r-tvtb
+	pkgdesc = TVTB: The VCF Tool Box
+	pkgver = 1.22.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/TVTB
+	arch = any
+	license = Artistic2.0
+	depends = r
+	depends = r-annotationfilter
+	depends = r-biocgenerics
+	depends = r-biocparallel
+	depends = r-biostrings
+	depends = r-ensembldb
+	depends = r-ensemblvep
+	depends = r-genomeinfodb
+	depends = r-genomicranges
+	depends = r-ggally
+	depends = r-ggplot2
+	depends = r-gviz
+	depends = r-iranges
+	depends = r-limma
+	depends = r-reshape2
+	depends = r-rsamtools
+	depends = r-s4vectors
+	depends = r-summarizedexperiment
+	depends = r-variantannotation
+	optdepends = r-biocstyle
+	optdepends = r-covr
+	optdepends = r-dt
+	optdepends = r-ensdb.hsapiens.v75
+	optdepends = r-knitr
+	optdepends = r-pander
+	optdepends = r-rmarkdown
+	optdepends = r-rtracklayer
+	optdepends = r-shiny
+	optdepends = r-testthat
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/TVTB_1.22.0.tar.gz
+	sha256sums = 1af5da609ec7b34cc10f5fe898bebf786f4fac573044fee992c86fe15df4dd00
+
+pkgname = r-tvtb
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..64d04abcddfd
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,56 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=TVTB
+_pkgver=1.22.0
+pkgname=r-${_pkgname,,}
+pkgver=1.22.0
+pkgrel=1
+pkgdesc='TVTB: The VCF Tool Box'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('Artistic2.0')
+depends=(
+  r
+  r-annotationfilter
+  r-biocgenerics
+  r-biocparallel
+  r-biostrings
+  r-ensembldb
+  r-ensemblvep
+  r-genomeinfodb
+  r-genomicranges
+  r-ggally
+  r-ggplot2
+  r-gviz
+  r-iranges
+  r-limma
+  r-reshape2
+  r-rsamtools
+  r-s4vectors
+  r-summarizedexperiment
+  r-variantannotation
+)
+optdepends=(
+  r-biocstyle
+  r-covr
+  r-dt
+  r-ensdb.hsapiens.v75
+  r-knitr
+  r-pander
+  r-rmarkdown
+  r-rtracklayer
+  r-shiny
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('1af5da609ec7b34cc10f5fe898bebf786f4fac573044fee992c86fe15df4dd00')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: