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| author | Pekka Ristola | 2024-05-03 13:49:53 +0300 |
|---|---|---|
| committer | Pekka Ristola | 2024-05-03 13:49:53 +0300 |
| commit | 54b96a2c9d7844fb10f3f0f50a088500bca854f4 (patch) | |
| tree | 2e51fa11760a2d0e41edf4f2db0932c0e060aa62 | |
| download | aur-54b96a2c9d7844fb10f3f0f50a088500bca854f4.tar.gz | |
Version 1.0.0
| -rw-r--r-- | .SRCINFO | 36 | ||||
| -rw-r--r-- | PKGBUILD | 59 |
2 files changed, 95 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO new file mode 100644 index 000000000000..ad7ad60e6380 --- /dev/null +++ b/.SRCINFO @@ -0,0 +1,36 @@ +pkgbase = r-txdbmaker + pkgdesc = Tools for making TxDb objects from genomic annotations + pkgver = 1.0.0 + pkgrel = 1 + url = https://bioconductor.org/packages/txdbmaker + arch = any + license = Artistic-2.0 + checkdepends = r-rmariadb + checkdepends = r-runit + depends = r-annotationdbi + depends = r-biobase + depends = r-biocgenerics + depends = r-biocio + depends = r-biomart + depends = r-dbi + depends = r-genomeinfodb + depends = r-genomicfeatures + depends = r-genomicranges + depends = r-httr + depends = r-iranges + depends = r-rjson + depends = r-rsqlite + depends = r-rtracklayer + depends = r-s4vectors + depends = r-ucsc.utils + optdepends = r-biocstyle + optdepends = r-ensembldb + optdepends = r-knitr + optdepends = r-mirbase.db + optdepends = r-rmariadb + optdepends = r-runit + source = https://bioconductor.org/packages/release/bioc/src/contrib/txdbmaker_1.0.0.tar.gz + md5sums = d2145305fc78518240d1d9cace6478b1 + b2sums = 72f341676a93374d1f77c09a6cef707e54b102b5aea58e097e89144ef1389e3f15d8e051176e9a88a75645079e0da4704da354e5a7b3b7f49cd3b79053769263 + +pkgname = r-txdbmaker diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..e03d3a3d9c0e --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,59 @@ +# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com> + +_pkgname=txdbmaker +_pkgver=1.0.0 +pkgname=r-${_pkgname,,} +pkgver=${_pkgver//-/.} +pkgrel=1 +pkgdesc="Tools for making TxDb objects from genomic annotations" +arch=(any) +url="https://bioconductor.org/packages/$_pkgname" +license=('Artistic-2.0') +depends=( + r-annotationdbi + r-biobase + r-biocgenerics + r-biocio + r-biomart + r-dbi + r-genomeinfodb + r-genomicfeatures + r-genomicranges + r-httr + r-iranges + r-rjson + r-rsqlite + r-rtracklayer + r-s4vectors + r-ucsc.utils +) +checkdepends=( + r-rmariadb + r-runit +) +optdepends=( + r-biocstyle + r-ensembldb + r-knitr + r-mirbase.db + r-rmariadb + r-runit +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +md5sums=('d2145305fc78518240d1d9cace6478b1') +b2sums=('72f341676a93374d1f77c09a6cef707e54b102b5aea58e097e89144ef1389e3f15d8e051176e9a88a75645079e0da4704da354e5a7b3b7f49cd3b79053769263') + +build() { + mkdir build + R CMD INSTALL -l build "$_pkgname" +} + +check() { + cd "$_pkgname/tests" + R_LIBS="$srcdir/build" Rscript --vanilla run_unitTests.R +} + +package() { + install -d "$pkgdir/usr/lib/R/library" + cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library" +} |