add r-uncoverapplib

2 files changed, 103 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..5be6690e6199
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,43 @@
+pkgbase = r-uncoverapplib
+	pkgdesc = Interactive graphical application for clinical assessment of sequence coverage at the base-pair level
+	pkgver = 1.6.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/uncoverappLib
+	arch = any
+	license = MIT
+	depends = r
+	depends = r-biocfilecache
+	depends = r-bsgenome.hsapiens.ucsc.hg19
+	depends = r-condformat
+	depends = r-dt
+	depends = r-ensdb.hsapiens.v75
+	depends = r-ensdb.hsapiens.v86
+	depends = r-genomicranges
+	depends = r-gviz
+	depends = r-homo.sapiens
+	depends = r-markdown
+	depends = r-openxlsx
+	depends = r-org.hs.eg.db
+	depends = r-organismdbi
+	depends = r-processx
+	depends = r-rappdirs
+	depends = r-rlist
+	depends = r-rsamtools
+	depends = r-shiny
+	depends = r-shinybs
+	depends = r-shinycssloaders
+	depends = r-shinyjs
+	depends = r-shinywidgets
+	depends = r-stringr
+	depends = r-txdb.hsapiens.ucsc.hg19.knowngene
+	depends = r-txdb.hsapiens.ucsc.hg38.knowngene
+	depends = r-bsgenome.hsapiens.ucsc.hg38
+	optdepends = r-biocstyle
+	optdepends = r-dplyr
+	optdepends = r-knitr
+	optdepends = r-rmarkdown
+	optdepends = r-testthat
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/uncoverappLib_1.6.0.tar.gz
+	sha256sums = 2c8cbc5fe9f2883da696406c1338a51ccee77a348963560fbf7b247c4f7c1b64
+
+pkgname = r-uncoverapplib
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..79a3f7b2c091
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,60 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=uncoverappLib
+_pkgver=1.6.0
+pkgname=r-${_pkgname,,}
+pkgver=1.6.0
+pkgrel=1
+pkgdesc='Interactive graphical application for clinical assessment of sequence coverage at the base-pair level'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('MIT')
+depends=(
+  r
+  r-biocfilecache
+  r-bsgenome.hsapiens.ucsc.hg19
+  r-condformat
+  r-dt
+  r-ensdb.hsapiens.v75
+  r-ensdb.hsapiens.v86
+  r-genomicranges
+  r-gviz
+  r-homo.sapiens
+  r-markdown
+  r-openxlsx
+  r-org.hs.eg.db
+  r-organismdbi
+  r-processx
+  r-rappdirs
+  r-rlist
+  r-rsamtools
+  r-shiny
+  r-shinybs
+  r-shinycssloaders
+  r-shinyjs
+  r-shinywidgets
+  r-stringr
+  r-txdb.hsapiens.ucsc.hg19.knowngene
+  r-txdb.hsapiens.ucsc.hg38.knowngene
+  r-bsgenome.hsapiens.ucsc.hg38
+)
+optdepends=(
+  r-biocstyle
+  r-dplyr
+  r-knitr
+  r-rmarkdown
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('2c8cbc5fe9f2883da696406c1338a51ccee77a348963560fbf7b247c4f7c1b64')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+  install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
+}
+# vim:set ts=2 sw=2 et: