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| author | Sukanka | 2022-06-07 02:29:42 +0800 |
|---|---|---|
| committer | Sukanka | 2022-06-07 02:29:42 +0800 |
| commit | 7b96d02db312df5695628ad6b7aa74320f7a2968 (patch) | |
| tree | ea293b0cbb098a9f249b87a4bf1ac59b50a35610 | |
| download | aur-7b96d02db312df5695628ad6b7aa74320f7a2968.tar.gz | |
add r-varcon
| -rw-r--r-- | .SRCINFO | 23 | ||||
| -rw-r--r-- | PKGBUILD | 39 |
2 files changed, 62 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO new file mode 100644 index 000000000000..1cdb4b9e3dd4 --- /dev/null +++ b/.SRCINFO @@ -0,0 +1,23 @@ +pkgbase = r-varcon + pkgdesc = VarCon: an R package for retrieving neighboring nucleotides of an SNV + pkgver = 1.4.0 + pkgrel = 1 + url = https://bioconductor.org/packages/VarCon + arch = any + license = GPL + depends = r + depends = r-biostrings + depends = r-bsgenome + depends = r-genomicranges + depends = r-ggplot2 + depends = r-iranges + depends = r-shiny + depends = r-shinycssloaders + depends = r-shinyfiles + optdepends = r-knitr + optdepends = r-rmarkdown + optdepends = r-testthat + source = https://bioconductor.org/packages/release/bioc/src/contrib/VarCon_1.4.0.tar.gz + sha256sums = 1f12f73092c432600bfa0e8e568b6470f5f1bee4ff92a0c5ed73fa0a857e1b50 + +pkgname = r-varcon diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..aa98329ef976 --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,39 @@ +# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> + +_pkgname=VarCon +_pkgver=1.4.0 +pkgname=r-${_pkgname,,} +pkgver=1.4.0 +pkgrel=1 +pkgdesc='VarCon: an R package for retrieving neighboring nucleotides of an SNV' +arch=('any') +url="https://bioconductor.org/packages/${_pkgname}" +license=('GPL') +depends=( + r + r-biostrings + r-bsgenome + r-genomicranges + r-ggplot2 + r-iranges + r-shiny + r-shinycssloaders + r-shinyfiles +) +optdepends=( + r-knitr + r-rmarkdown + r-testthat +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +sha256sums=('1f12f73092c432600bfa0e8e568b6470f5f1bee4ff92a0c5ed73fa0a857e1b50') + +build() { + R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" +} + +package() { + install -dm0755 "${pkgdir}/usr/lib/R/library" + cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" +} +# vim:set ts=2 sw=2 et: |