add r-varfrompdb

2 files changed, 58 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..1d80ecfddb13
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,21 @@
+pkgbase = r-varfrompdb
+	pkgdesc = Disease-Gene-Variant Relations Mining from the Public Databases and Literature
+	pkgver = 2.2.10
+	pkgrel = 4
+	url = https://cran.r-project.org/package=VarfromPDB
+	arch = any
+	license = GPL
+	depends = r
+	depends = r-curl
+	depends = r-rismed
+	depends = r-stringi
+	depends = r-stringr
+	depends = r-xml
+	depends = r-xml2r
+	optdepends = r-knitr
+	optdepends = r-rmarkdown
+	optdepends = r-tools
+	source = https://cran.r-project.org/src/contrib/VarfromPDB_2.2.10.tar.gz
+	sha256sums = ec303962a16317769d06e70482435af5127796897659208c1d52f305acf14826
+
+pkgname = r-varfrompdb
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..ee35aa55c335
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,37 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=VarfromPDB
+_pkgver=2.2.10
+pkgname=r-${_pkgname,,}
+pkgver=2.2.10
+pkgrel=4
+pkgdesc='Disease-Gene-Variant Relations Mining from the Public Databases and Literature'
+arch=('any')
+url="https://cran.r-project.org/package=${_pkgname}"
+license=('GPL')
+depends=(
+  r
+  r-curl
+  r-rismed
+  r-stringi
+  r-stringr
+  r-xml
+  r-xml2r
+)
+optdepends=(
+  r-knitr
+  r-rmarkdown
+  r-tools
+)
+source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('ec303962a16317769d06e70482435af5127796897659208c1d52f305acf14826')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: