add r-viper

2 files changed, 49 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..8d3f9d1191c5
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,16 @@
+pkgbase = r-viper
+	pkgdesc = Virtual Inference of Protein-activity by Enriched Regulon analysis
+	pkgver = 1.30.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/viper
+	arch = any
+	license = custom
+	depends = r
+	depends = r-biobase
+	depends = r-e1071
+	depends = r-mixtools
+	optdepends = r-bcellviper
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/viper_1.30.0.tar.gz
+	sha256sums = 1d602263433bdf03350e0f86b5b1bf5cbc7e022303ce4d6176dcbebfc0732646
+
+pkgname = r-viper
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..f23ffa412447
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,33 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=viper
+_pkgver=1.30.0
+pkgname=r-${_pkgname,,}
+pkgver=1.30.0
+pkgrel=1
+pkgdesc='Virtual Inference of Protein-activity by Enriched Regulon analysis'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('custom')
+depends=(
+  r
+  r-biobase
+  r-e1071
+  r-mixtools
+)
+optdepends=(
+  r-bcellviper
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('1d602263433bdf03350e0f86b5b1bf5cbc7e022303ce4d6176dcbebfc0732646')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+  install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
+}
+# vim:set ts=2 sw=2 et: